FC925294

Overview
NameFC925294
Unique NameFC925294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3433 contig Ccv1_Contig3433:83..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_ARATH (Elongation factor G, mitochondrial OS=Arabidopsis thaliana GN=At1g45332 PE=1 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 2.154e-89
Identity = 167/214 (78.04%), Postives = 177/214 (82.71%), Query Frame = 2
Query:    2 FPRSPAPRLLYTLFXXXXXXXXXXXXXXXXAALLQGNFHLQSRQFSAGGNLARAKDDKEPWWKESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVFGSGK 643
            FP SPAP  L  LF                AALL G+F L  R FSAG     AKD+KEPWWKESM++LRNIGISAHIDSGKTTLTER+LFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAAT C WKDY++NIIDTPGHVDFT+EVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR+AFINKLDRMGADPWKV    +
Sbjct:    4 FPTSPAPNRLLRLFSSNKRSSSPT------AALLTGDFQL-IRHFSAGTAARVAKDEKEPWWKESMDKLRNIGISAHIDSGKTTLTERVLFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRVAFINKLDRMGADPWKVLNQAR 210          

HSP 2 Score: 24.2534 bits (51), Expect = 2.154e-89
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  624 KFLDQARAKLAHH 662
            K L+QARAKL HH
Sbjct:  204 KVLNQARAKLRHH 216          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_ORYSJ (Elongation factor G, mitochondrial OS=Oryza sativa subsp. japonica GN=Os03g0565500 PE=2 SV=2)

HSP 1 Score: 290.812 bits (743), Expect = 3.371e-78
Identity = 141/174 (81.03%), Postives = 157/174 (90.23%), Query Frame = 2
Query:  125 SRQFSAGGNLARAKDDKE-PWWKESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVFGSGK 643
            +R+  +  +  RA+D+KE   W+ESM+R+RNIGISAHIDSGKTTLTER+L+YTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAAT C W  YQ+NIIDTPGHVDFT+EVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYE+PR+AFINKLDRMGADPWKV    +
Sbjct:   40 ARRGMSSASALRARDEKEVARWRESMDRMRNIGISAHIDSGKTTLTERVLYYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATYCTWNGYQVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEIPRVAFINKLDRMGADPWKVLNQAR 213          

HSP 2 Score: 23.0978 bits (48), Expect = 3.371e-78
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  624 KFLDQARAKLAHH 662
            K L+QAR+KL HH
Sbjct:  207 KVLNQARSKLRHH 219          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_DICDI (Elongation factor G, mitochondrial OS=Dictyostelium discoideum GN=gfm1 PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.288e-65
Identity = 121/145 (83.45%), Postives = 131/145 (90.34%), Query Frame = 2
Query:  194 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKV 628
            S+  LRNIGISAHIDSGKTTLTERIL+YTGRI EIHEVRG+DGVGAKMDSMDLEREKGITIQSAAT C W +  INIIDTPGHVDFT+EVERALRVLDGA+LV+C V GVQSQ+ITVDRQMRRY VPR+ FINKLDR GA+PW V
Sbjct:   36 SVSGLRNIGISAHIDSGKTTLTERILYYTGRIKEIHEVRGKDGVGAKMDSMDLEREKGITIQSAATYCKWGENHINIIDTPGHVDFTIEVERALRVLDGAVLVMCGVSGVQSQTITVDRQMRRYNVPRVVFINKLDRTGANPWNV 180          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_LEPIN (Elongation factor G OS=Leptospira interrogans GN=fusA PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.608e-65
Identity = 122/146 (83.56%), Postives = 133/146 (91.10%), Query Frame = 2
Query:  191 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKV 628
            E + + RNIGISAHIDSGKTTLTERILFYT RIH IHEVRG+DGVGAKMDSMDLERE+GITIQSAAT C WK++ INIIDTPGHVDFTVEVER+LRVLD AILVLC V GVQSQSITVDRQMRRY VPR+AFINKLDR GA+P++V
Sbjct:   12 EKLLKTRNIGISAHIDSGKTTLTERILFYTNRIHAIHEVRGKDGVGAKMDSMDLERERGITIQSAATYCQWKNHTINIIDTPGHVDFTVEVERSLRVLDSAILVLCGVAGVQSQSITVDRQMRRYNVPRVAFINKLDRTGANPFRV 157          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_LEPIC (Elongation factor G OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=fusA PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.608e-65
Identity = 122/146 (83.56%), Postives = 133/146 (91.10%), Query Frame = 2
Query:  191 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKV 628
            E + + RNIGISAHIDSGKTTLTERILFYT RIH IHEVRG+DGVGAKMDSMDLERE+GITIQSAAT C WK++ INIIDTPGHVDFTVEVER+LRVLD AILVLC V GVQSQSITVDRQMRRY VPR+AFINKLDR GA+P++V
Sbjct:   12 EKLLKTRNIGISAHIDSGKTTLTERILFYTNRIHAIHEVRGKDGVGAKMDSMDLERERGITIQSAATYCQWKNHTINIIDTPGHVDFTVEVERSLRVLDSAILVLCGVAGVQSQSITVDRQMRRYNVPRVAFINKLDRTGANPFRV 157          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_LEPBL (Elongation factor G OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=fusA PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.608e-65
Identity = 122/146 (83.56%), Postives = 133/146 (91.10%), Query Frame = 2
Query:  191 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKV 628
            E + + RNIGISAHIDSGKTTLTERILFYT RIH IHEVRG+DGVGAKMDSMDLERE+GITIQSAAT C WK++ INIIDTPGHVDFTVEVER+LRVLD AILVLC V GVQSQSITVDRQMRRY VPR+AFINKLDR GA+P++V
Sbjct:   12 EKLLKTRNIGISAHIDSGKTTLTERILFYTNRIHAIHEVRGKDGVGAKMDSMDLERERGITIQSAATYCQWKNHTINIIDTPGHVDFTVEVERSLRVLDSAILVLCGVAGVQSQSITVDRQMRRYNVPRVAFINKLDRTGANPFRV 157          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_LEPBJ (Elongation factor G OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=fusA PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.608e-65
Identity = 122/146 (83.56%), Postives = 133/146 (91.10%), Query Frame = 2
Query:  191 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKV 628
            E + + RNIGISAHIDSGKTTLTERILFYT RIH IHEVRG+DGVGAKMDSMDLERE+GITIQSAAT C WK++ INIIDTPGHVDFTVEVER+LRVLD AILVLC V GVQSQSITVDRQMRRY VPR+AFINKLDR GA+P++V
Sbjct:   12 EKLLKTRNIGISAHIDSGKTTLTERILFYTNRIHAIHEVRGKDGVGAKMDSMDLERERGITIQSAATYCQWKNHTINIIDTPGHVDFTVEVERSLRVLDSAILVLCGVAGVQSQSITVDRQMRRYNVPRVAFINKLDRTGANPFRV 157          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_CULQU (Elongation factor G, mitochondrial OS=Culex quinquefasciatus GN=CPIJ005834 PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 7.325e-65
Identity = 120/149 (80.54%), Postives = 137/149 (91.95%), Query Frame = 2
Query:  197 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVFGSGK 643
            +ER+RNIGISAHIDSGKTTLTERILFYTGRI E+HEV+G+D VGA MDSM+LER++GITIQSAAT   WKD+ INIIDTPGHVDFTVEVERALRVLDGA+LVLCSVGGVQSQ++TV+RQM+RY VP LAFINKLDRMGA+P++V G  K
Sbjct:   37 LERIRNIGISAHIDSGKTTLTERILFYTGRIKEMHEVKGKDNVGATMDSMELERQRGITIQSAATYTVWKDHNINIIDTPGHVDFTVEVERALRVLDGAVLVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRMGANPYRVLGQMK 185          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_DROER (Elongation factor G, mitochondrial OS=Drosophila erecta GN=GG23544 PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.131e-64
Identity = 126/177 (71.19%), Postives = 147/177 (83.05%), Query Frame = 2
Query:   98 LLQGNFHLQSRQFSAGGNLARAKDDKEPWWKESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKV 628
            LL GN HL+ R   + G    +   K    K  +ER+RNIGISAHIDSGKTTLTERILFYTGRI E+HEVRG+D VGA MDSM+LER++GITIQSAAT   WKD  INIIDTPGHVDFTVEVERALRVLDGA+LVLC+VGGVQSQ++TV+RQM+RY VP LAFINKLDR+G++P++V
Sbjct:    7 LLTGNNHLRIRALESLGKAGYSSHAKFSEHKP-IERIRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMDSMELERQRGITIQSAATYTLWKDTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYRV 182          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_SCHJY (Elongation factor G, mitochondrial OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=mef1 PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 118/154 (76.62%), Postives = 135/154 (87.66%), Query Frame = 2
Query:  191 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK---------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWK 625
            +++ RLRNIGISAHIDSGKTT TER+LFYTGRI +IHEVRG+D VGAKMDSM+LEREKGITIQSAAT C WK         DY INIIDTPGH+DFT+EVERALRVLDGA+L+LC+V GVQSQ+ITVDRQMRRY VPR+ FINK+DRMGA+PW+
Sbjct:   57 DALSRLRNIGISAHIDSGKTTFTERVLFYTGRIKDIHEVRGKDNVGAKMDSMELEREKGITIQSAATYCNWKRKQKDGDEQDYIINIIDTPGHIDFTIEVERALRVLDGAVLILCAVSGVQSQTITVDRQMRRYNVPRITFINKMDRMGANPWR 210          
The following BLAST results are available for this feature:
BLAST of FC925294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFGM_ARATH2.154e-8978.04Elongation factor G, mitochondrial OS=Arabidopsis ... [more]
EFGM_ORYSJ3.371e-7881.03Elongation factor G, mitochondrial OS=Oryza sativa... [more]
EFGM_DICDI3.288e-6583.45Elongation factor G, mitochondrial OS=Dictyosteliu... [more]
EFG_LEPIN5.608e-6583.56Elongation factor G OS=Leptospira interrogans GN=f... [more]
EFG_LEPIC5.608e-6583.56Elongation factor G OS=Leptospira interrogans sero... [more]
EFG_LEPBL5.608e-6583.56Elongation factor G OS=Leptospira borgpetersenii s... [more]
EFG_LEPBJ5.608e-6583.56Elongation factor G OS=Leptospira borgpetersenii s... [more]
EFGM_CULQU7.325e-6580.54Elongation factor G, mitochondrial OS=Culex quinqu... [more]
EFGM_DROER2.131e-6471.19Elongation factor G, mitochondrial OS=Drosophila e... [more]
EFGM_SCHJY2.783e-6476.62Elongation factor G, mitochondrial OS=Schizosaccha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YF17FM1 TF Citrus clementina cDNA clone KN0AAP3YF17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925294 ID=FC925294; Name=FC925294; organism=Citrus clementina; type=EST; length=679bp
ATTCCCACGATCTCCAGCACCACGTCTCCTCTACACTCTCTTCTCCTCTT
CGAGAACGACACCGACCAAATCCTCACCCCAATCTCCGTCTGCAGCCCTC
CTCCAAGGAAACTTCCACCTCCAATCGCGGCAGTTCTCGGCGGGAGGAAA
CCTCGCACGTGCGAAGGATGATAAGGAGCCATGGTGGAAGGAATCAATGG
AGCGGCTCCGAAATATCGGAATCTCGGCACATATCGATTCCGGAAAAACT
ACACTAACCGAGCGAATTCTGTTTTACACTGGACGGATTCACGAGATTCA
CGAGGTTCGAGGGCGAGACGGCGTCGGCGCCAAAATGGATTCTATGGATT
TGGAGCGTGAGAAAGGTATCACAATTCAGTCAGCCGCCACTAGCTGTGCT
TGGAAGGATTACCAGATTAATATAATTGACACTCCTGGACACGTAGACTT
CACAGTTGAAGTAGAAAGGGCTTTGCGAGTTCTTGATGGCGCAATTCTTG
TGCTTTGTAGTGTTGGTGGCGTGCAAAGTCAATCAATTACCGTTGACCGG
CAAATGAGGAGATACGAGGTGCCAAGACTGGCTTTCATTAACAAACTTGA
TAGAATGGGAGCTGATCCATGGAAAGTTTTTGGATCAGGCAAGGGCTAAG
CTGGCGCACCACCTGTGCTGCTGTGCAAG
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