FC925298

Overview
NameFC925298
Unique NameFC925298
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925298_ssr423 microsatellite FC925298_ssr423:423..434. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14619 contig Ccv1_Contig14619:1..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925298 vs. ExPASy Swiss-Prot
Match: DDPS6_ARATH (Dehydrodolichyl diphosphate synthase 6 OS=Arabidopsis thaliana GN=At2g17570 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 9.698e-27
Identity = 56/73 (76.71%), Postives = 65/73 (89.04%), Query Frame = 2
Query:  206 INLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQRNHSFLE 424
            I LVD+E++M M+VAP+PDIL+RSSGETRLSNFLLWQT N  L SPAALWPEIGL HL+WA+L FQRNHS+LE
Sbjct:  217 IQLVDIEENMQMSVAPNPDILIRSSGETRLSNFLLWQTGNTQLCSPAALWPEIGLRHLLWAILNFQRNHSYLE 289          
BLAST of FC925298 vs. ExPASy Swiss-Prot
Match: DDPS8_ARATH (Dehydrodolichyl diphosphate synthase 8 OS=Arabidopsis thaliana GN=At5g60510 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.558e-19
Identity = 41/73 (56.16%), Postives = 54/73 (73.97%), Query Frame = 2
Query:  206 INLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQRNHSFLE 424
            + L D+E+ MY +V P PD+++R+ G  RLSNF+ WQTS  LL    ALWPE+GLWHLVWA+LKFQR   +L+
Sbjct:  194 LELSDIEECMYTSVVPVPDLVVRTGGGDRLSNFMTWQTSRALLHRTEALWPELGLWHLVWAILKFQRMQDYLQ 266          
BLAST of FC925298 vs. ExPASy Swiss-Prot
Match: DDPS7_ARATH (Dehydrodolichyl diphosphate synthase 7 OS=Arabidopsis thaliana GN=At5g60500 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.341e-19
Identity = 41/73 (56.16%), Postives = 54/73 (73.97%), Query Frame = 2
Query:  203 IINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQRNHSFL 421
            ++ L DVE+ MY ++ P PD+++R+ G  RLSNF+ WQTS  LL    ALWPE+GLWHLVWA+LKFQR   +L
Sbjct:  192 LLELSDVEECMYTSIVPVPDLVIRTGGGDRLSNFMTWQTSRSLLHRTEALWPELGLWHLVWAILKFQRMQDYL 264          
BLAST of FC925298 vs. ExPASy Swiss-Prot
Match: DHDDS_MOUSE (Dehydrodolichyl diphosphate synthase OS=Mus musculus GN=Dhdds PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.415e-14
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 2
Query:  221 VEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQRNHSFLE 424
            ++K +Y   +P PDIL+R+SGE RLS+FLLWQTS+  L     LWPE   W+L  A+L+FQRNH  L+
Sbjct:  188 LDKCLYSNHSPHPDILIRTSGEVRLSDFLLWQTSHSCLVFQPVLWPEYTFWNLCEAILQFQRNHGALQ 255          
BLAST of FC925298 vs. ExPASy Swiss-Prot
Match: DHDDS_HUMAN (Dehydrodolichyl diphosphate synthase OS=Homo sapiens GN=DHDDS PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.230e-13
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 2
Query:  221 VEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQRNHSFLE 424
            ++K +Y   +P PDIL+R+SGE RLS+FLLWQTS+  L     LWPE   W+L  A+L+FQ NHS L+
Sbjct:  188 LDKCLYTNRSPHPDILIRTSGEVRLSDFLLWQTSHSCLVFQPVLWPEYTFWNLFEAILQFQMNHSVLQ 255          
The following BLAST results are available for this feature:
BLAST of FC925298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
DDPS6_ARATH9.698e-2776.71Dehydrodolichyl diphosphate synthase 6 OS=Arabidop... [more]
DDPS8_ARATH2.558e-1956.16Dehydrodolichyl diphosphate synthase 8 OS=Arabidop... [more]
DDPS7_ARATH3.341e-1956.16Dehydrodolichyl diphosphate synthase 7 OS=Arabidop... [more]
DHDDS_MOUSE9.415e-1452.94Dehydrodolichyl diphosphate synthase OS=Mus muscul... [more]
DHDDS_HUMAN1.230e-1352.94Dehydrodolichyl diphosphate synthase OS=Homo sapie... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YF23FM1 TF Citrus clementina cDNA clone KN0AAP3YF23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925298 ID=FC925298; Name=FC925298; organism=Citrus clementina; type=EST; length=762bp
TGAAGAATCCTGCTTGGAAAAGGCAAGTAGAGTTTGTAATGGTGCGATTG
AAAGAGTTAAAGGCACTGAGGATATCAATGGTGCAACTGTGTGTACTGAT
GGAGTATCCTGTGACTATAAAAGTGAAGCTCAAGCATTGAGGGCTGGTAG
AATTGGCAATGGTGTGACTGAAGGATTTGAAGAGAAGCAGGGGAATAATC
CTATTATAAATCTGGTAGATGTTGAGAAGCACATGTACATGGCTGTTGCT
CCAGATCCTGACATCCTGATGCGAAGCTCTGGTGAGACCCGCCTGAGCAA
TTTCCTCCTTTGGCAAACAAGTAATTGCCTGTTGGATTCTCCAGCTGCAT
TGTGGCCAGAGATTGGTTTGTGGCACCTGGTATGGGCAGTGTTAAAATTC
CAACGAAATCACTCCTTTTTGGAGAAGAAGAAGAAGCAGTTGTAACATTT
ATGACACAAAATAACAGTATTCTAGCTGATGGATAGGGGGAAGTTGTACA
TTGGTTCGAGGTACCATTGTCGAATTTGAGTGAAAGCTTTGGAGCTGGAG
TTTGGAACGAACCTCACCTTCTGCTCTCCCTTCGCACTACTTCGCATTAT
ATGCCTGGGTAATAAAAAATTTGGTGGATGTTAGAGACTAGCATGGTCTC
TAATGTAATGAATCTGGTGCCATATTGGAATTACTTGTAACAAGTATAAT
GTTGTCATCTCGAATTTTAAATTATGATGAAAAACTTTAAAATAAAAAAA
AAAAAAAAAAAA
back to top