FC925299

Overview
NameFC925299
Unique NameFC925299
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925299 vs. ExPASy Swiss-Prot
Match: PSD12_DICDI (26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium discoideum GN=psmD12 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.080e-20
Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 2
Query:    2 SKYYFRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVHK 265
            S YY +I+  RLAELL LS+ E+EK +SD+V +K + AKIDRP GI  F    D N +LN+WA N+  LLDLVEK+ H + +E M+HK
Sbjct:  358 STYYQKISTARLAELLDLSLDESEKFVSDLVSNKTIFAKIDRPAGIATFTTTNDPNKVLNAWANNITSLLDLVEKTNHLVQREFMLHK 445          
BLAST of FC925299 vs. ExPASy Swiss-Prot
Match: PSD12_PONAB (26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii GN=PSMD12 PE=2 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 2.351e-19
Identity = 45/87 (51.72%), Postives = 63/87 (72.41%), Query Frame = 2
Query:    2 SKYYFRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVH 262
            +KYY RIT+KR+A+LL LS+ E+E  LS++VV+K + AK+DR  GI+ FQ  KD N++LN W+  L  L+ LV K+ H I KE M+H
Sbjct:  367 AKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIH 453          
BLAST of FC925299 vs. ExPASy Swiss-Prot
Match: PSD12_HUMAN (26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens GN=PSMD12 PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 2.351e-19
Identity = 45/87 (51.72%), Postives = 63/87 (72.41%), Query Frame = 2
Query:    2 SKYYFRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVH 262
            +KYY RIT+KR+A+LL LS+ E+E  LS++VV+K + AK+DR  GI+ FQ  KD N++LN W+  L  L+ LV K+ H I KE M+H
Sbjct:  367 AKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIH 453          
BLAST of FC925299 vs. ExPASy Swiss-Prot
Match: PSD12_BOVIN (26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus GN=PSMD12 PE=2 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 2.351e-19
Identity = 45/87 (51.72%), Postives = 63/87 (72.41%), Query Frame = 2
Query:    2 SKYYFRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVH 262
            +KYY RIT+KR+A+LL LS+ E+E  LS++VV+K + AK+DR  GI+ FQ  KD N++LN W+  L  L+ LV K+ H I KE M+H
Sbjct:  367 AKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIH 453          
BLAST of FC925299 vs. ExPASy Swiss-Prot
Match: PSD12_MOUSE (26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus GN=Psmd12 PE=2 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 3.070e-19
Identity = 44/87 (50.57%), Postives = 63/87 (72.41%), Query Frame = 2
Query:    2 SKYYFRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVH 262
            +KYY RIT+KR+A+LL LS+ E+E  LS++VV+K + AK+DR  G++ FQ  KD N++LN W+  L  L+ LV K+ H I KE M+H
Sbjct:  367 AKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIH 453          
BLAST of FC925299 vs. ExPASy Swiss-Prot
Match: RPN5_YEAST (26S proteasome regulatory subunit RPN5 OS=Saccharomyces cerevisiae GN=RPN5 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.518e-13
Identity = 38/87 (43.68%), Postives = 59/87 (67.82%), Query Frame = 2
Query:    2 SKYYFRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVH 262
            S+YY RITL RL ELL L+  + E ++SD+V    + AK++RP  IV F+  K+S+ +LN W+ N+++LL+ +E   H I KE ++H
Sbjct:  354 SEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELLEHIETIGHLITKEEIMH 440          
The following BLAST results are available for this feature:
BLAST of FC925299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PSD12_DICDI8.080e-2053.4126S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_PONAB2.351e-1951.7226S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_HUMAN2.351e-1951.7226S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_BOVIN2.351e-1951.7226S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_MOUSE3.070e-1950.5726S proteasome non-ATPase regulatory subunit 12 OS... [more]
RPN5_YEAST2.518e-1343.6826S proteasome regulatory subunit RPN5 OS=Saccharo... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP3YF24FM1 TF Citrus clementina cDNA clone KN0AAP3YF24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925299 ID=FC925299; Name=FC925299; organism=Citrus clementina; type=EST; length=629bp
CTCTAAGTATTACTTTAGGATTACATTGAAGAGACTGGCAGAGCTATTGT
GTCTGAGTATCCAGGAAGCAGAGAAGCACCTTTCAGACATGGTTGTTTCC
AAGGCACTGGTAGCTAAAATTGACAGGCCGCAGGGAATAGTCTGTTTCCA
GGTAGCCAAGGATAGCAATGACATTCTCAATTCATGGGCAATGAACTTGG
AGAAGCTGCTTGATCTTGTTGAGAAGAGTTGCCATCAAATTCACAAAGAA
ACTATGGTTCACAAAACTGCTTTGAAAGTATGAAATCAATGTCGCCTCCA
ATCTGCAGGTTTCAATTGTGATCTTAATCAACGTGTATTCAACTACGACT
GGGTTGATCAAGCATGCAATCTATCACAGTTCTTTTGTTGGTAGGTTTAG
GAGATATAGACCTTGCTTTTGCTTTCTAGAACTCAAAAGATTGTTGTATA
CTATCGGTACGTACCTTTGCCGCTGTCTAGAGCATAAACCTCATTGGTCT
TGTTTCATAGCAGGGGAAAGAAATTGAATGCTTCACTTGTTCTTTATTTT
CTTTGGCTTGGATTATGTGATTTTGGTCTTTTTCATAATTTCCTAAACTA
ATCTGTGCTGAAAAAAAAAAAAAAAAAAA
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