FC925299
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC925299 vs. ExPASy Swiss-Prot
Match: PSD12_DICDI (26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium discoideum GN=psmD12 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 8.080e-20 Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 2 Query: 2 SKYYFRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVHK 265 S YY +I+ RLAELL LS+ E+EK +SD+V +K + AKIDRP GI F D N +LN+WA N+ LLDLVEK+ H + +E M+HK Sbjct: 358 STYYQKISTARLAELLDLSLDESEKFVSDLVSNKTIFAKIDRPAGIATFTTTNDPNKVLNAWANNITSLLDLVEKTNHLVQREFMLHK 445
BLAST of FC925299 vs. ExPASy Swiss-Prot
Match: PSD12_PONAB (26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii GN=PSMD12 PE=2 SV=3) HSP 1 Score: 95.5153 bits (236), Expect = 2.351e-19 Identity = 45/87 (51.72%), Postives = 63/87 (72.41%), Query Frame = 2 Query: 2 SKYYFRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVH 262 +KYY RIT+KR+A+LL LS+ E+E LS++VV+K + AK+DR GI+ FQ KD N++LN W+ L L+ LV K+ H I KE M+H Sbjct: 367 AKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIH 453
BLAST of FC925299 vs. ExPASy Swiss-Prot
Match: PSD12_HUMAN (26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens GN=PSMD12 PE=1 SV=3) HSP 1 Score: 95.5153 bits (236), Expect = 2.351e-19 Identity = 45/87 (51.72%), Postives = 63/87 (72.41%), Query Frame = 2 Query: 2 SKYYFRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVH 262 +KYY RIT+KR+A+LL LS+ E+E LS++VV+K + AK+DR GI+ FQ KD N++LN W+ L L+ LV K+ H I KE M+H Sbjct: 367 AKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIH 453
BLAST of FC925299 vs. ExPASy Swiss-Prot
Match: PSD12_BOVIN (26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus GN=PSMD12 PE=2 SV=3) HSP 1 Score: 95.5153 bits (236), Expect = 2.351e-19 Identity = 45/87 (51.72%), Postives = 63/87 (72.41%), Query Frame = 2 Query: 2 SKYYFRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVH 262 +KYY RIT+KR+A+LL LS+ E+E LS++VV+K + AK+DR GI+ FQ KD N++LN W+ L L+ LV K+ H I KE M+H Sbjct: 367 AKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIH 453
BLAST of FC925299 vs. ExPASy Swiss-Prot
Match: PSD12_MOUSE (26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus GN=Psmd12 PE=2 SV=3) HSP 1 Score: 95.1301 bits (235), Expect = 3.070e-19 Identity = 44/87 (50.57%), Postives = 63/87 (72.41%), Query Frame = 2 Query: 2 SKYYFRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVH 262 +KYY RIT+KR+A+LL LS+ E+E LS++VV+K + AK+DR G++ FQ KD N++LN W+ L L+ LV K+ H I KE M+H Sbjct: 367 AKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIH 453
BLAST of FC925299 vs. ExPASy Swiss-Prot
Match: RPN5_YEAST (26S proteasome regulatory subunit RPN5 OS=Saccharomyces cerevisiae GN=RPN5 PE=1 SV=3) HSP 1 Score: 75.485 bits (184), Expect = 2.518e-13 Identity = 38/87 (43.68%), Postives = 59/87 (67.82%), Query Frame = 2 Query: 2 SKYYFRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVH 262 S+YY RITL RL ELL L+ + E ++SD+V + AK++RP IV F+ K+S+ +LN W+ N+++LL+ +E H I KE ++H Sbjct: 354 SEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELLEHIETIGHLITKEEIMH 440 The following BLAST results are available for this feature:
BLAST of FC925299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC925299 ID=FC925299; Name=FC925299; organism=Citrus clementina; type=EST; length=629bpback to top |