FC925302

Overview
NameFC925302
Unique NameFC925302
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length458
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925302 vs. ExPASy Swiss-Prot
Match: SBP_ARATH (Putative selenium-binding protein OS=Arabidopsis thaliana GN=At4g14030 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.029e-21
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 2
Query:    2 ELPLKGSHMLQIDVHSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 172
            E+  KGSH++QIDV +EKGG+ INP+FFVDF  EPDGP+LAHEMRYPGGDCTSDIWI
Sbjct:  434 EIMEKGSHIIQIDVDTEKGGLTINPDFFVDFGDEPDGPSLAHEMRYPGGDCTSDIWI 490          
BLAST of FC925302 vs. ExPASy Swiss-Prot
Match: SBP1B_XENLA (Selenium-binding protein 1-B OS=Xenopus laevis GN=selenbp1-B PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.608e-18
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 2
Query:   14 KGSHMLQIDVHSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 172
            +G+ MLQIDV +EKGG+ +NPNF VDF  EPDGP LAHE+RYPGGDC+SDIWI
Sbjct:  420 EGAVMLQIDVDTEKGGLKLNPNFLVDFGKEPDGPVLAHELRYPGGDCSSDIWI 472          
BLAST of FC925302 vs. ExPASy Swiss-Prot
Match: SBP1A_XENLA (Selenium-binding protein 1-A OS=Xenopus laevis GN=selenbp1-A PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.608e-18
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 2
Query:    2 ELPLKGSHMLQIDVHSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 172
            +L  +G+ MLQIDV ++KGG+ +NPNF VDF  EPDGP LAHE+RYPGGDCTSDIWI
Sbjct:  416 DLLKEGAVMLQIDVDTKKGGLKLNPNFLVDFGKEPDGPVLAHEIRYPGGDCTSDIWI 472          
BLAST of FC925302 vs. ExPASy Swiss-Prot
Match: SBP1_XENTR (Selenium-binding protein 1 OS=Xenopus tropicalis GN=selenbp1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.109e-18
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 2
Query:   14 KGSHMLQIDVHSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 172
            +GS MLQIDV +EKGG+ +NPNF VDF  EP GP LAHE+RYPGGDC+SDIW+
Sbjct:  420 EGSVMLQIDVDTEKGGLKLNPNFLVDFGKEPGGPVLAHELRYPGGDCSSDIWV 472          
BLAST of FC925302 vs. ExPASy Swiss-Prot
Match: SBP1_DANRE (Selenium-binding protein 1 OS=Danio rerio GN=selenbp1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.979e-18
Identity = 38/57 (66.67%), Postives = 49/57 (85.96%), Query Frame = 2
Query:    2 ELPLKGSHMLQIDVHSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 172
            +L  +GS M+QIDV+++ GG+ +N NF VDF AEP+GPALAHE+RYPGGDCTSDIW+
Sbjct:  401 DLIKEGSVMMQIDVNTDTGGLKLNENFLVDFGAEPEGPALAHELRYPGGDCTSDIWL 457          
BLAST of FC925302 vs. ExPASy Swiss-Prot
Match: SBP1_PONAB (Selenium-binding protein 1 OS=Pongo abelii GN=SELENBP1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.322e-17
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = 2
Query:    2 ELPLKGSHMLQIDVHSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 172
            +L  +GS MLQ+DV + KGG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  416 DLIREGSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472          
BLAST of FC925302 vs. ExPASy Swiss-Prot
Match: SBP1_HUMAN (Selenium-binding protein 1 OS=Homo sapiens GN=SELENBP1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 2.322e-17
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = 2
Query:    2 ELPLKGSHMLQIDVHSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 172
            +L  +GS MLQ+DV + KGG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  416 DLIREGSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472          
BLAST of FC925302 vs. ExPASy Swiss-Prot
Match: SBP1_MOUSE (Selenium-binding protein 1 OS=Mus musculus GN=Selenbp1 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 5.172e-17
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 2
Query:    2 ELPLKGSHMLQIDVHSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 172
            +L  +GS MLQIDV +  GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  416 DLIREGSMMLQIDVDTVNGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472          
BLAST of FC925302 vs. ExPASy Swiss-Prot
Match: SBP1_RAT (Selenium-binding protein 1 OS=Rattus norvegicus GN=Selenbp1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.755e-17
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 2
Query:   14 KGSHMLQIDVHSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 172
            +GS MLQIDV +  GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  420 EGSVMLQIDVDTANGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472          
BLAST of FC925302 vs. ExPASy Swiss-Prot
Match: SBP1_BOVIN (Selenium-binding protein 1 OS=Bos taurus GN=SELENBP1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.755e-17
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 2
Query:    2 ELPLKGSHMLQIDVHSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 172
            +L  +GS MLQIDV + +GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIW+
Sbjct:  416 DLIREGSVMLQIDVDTVRGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWL 472          
The following BLAST results are available for this feature:
BLAST of FC925302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SBP_ARATH2.029e-2177.19Putative selenium-binding protein OS=Arabidopsis t... [more]
SBP1B_XENLA1.608e-1873.58Selenium-binding protein 1-B OS=Xenopus laevis GN=... [more]
SBP1A_XENLA1.608e-1870.18Selenium-binding protein 1-A OS=Xenopus laevis GN=... [more]
SBP1_XENTR6.109e-1871.70Selenium-binding protein 1 OS=Xenopus tropicalis G... [more]
SBP1_DANRE7.979e-1866.67Selenium-binding protein 1 OS=Danio rerio GN=selen... [more]
SBP1_PONAB2.322e-1768.42Selenium-binding protein 1 OS=Pongo abelii GN=SELE... [more]
SBP1_HUMAN2.322e-1768.42Selenium-binding protein 1 OS=Homo sapiens GN=SELE... [more]
SBP1_MOUSE5.172e-1768.42Selenium-binding protein 1 OS=Mus musculus GN=Sele... [more]
SBP1_RAT6.755e-1771.70Selenium-binding protein 1 OS=Rattus norvegicus GN... [more]
SBP1_BOVIN6.755e-1766.67Selenium-binding protein 1 OS=Bos taurus GN=SELENB... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YC01FM1 TF Citrus clementina cDNA clone KN0AAP11YC01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925302 ID=FC925302; Name=FC925302; organism=Citrus clementina; type=EST; length=458bp
TGAACTCCCTTTGAAAGGATCCCACATGTTACAGATTGATGTCCACTCCG
AGAAGGGTGGTATGGCTATCAATCCAAACTTTTTTGTGGACTTTGAAGCT
GAACCTGATGGTCCTGCCCTAGCTCATGAGATGAGGTATCCTGGTGGTGA
TTGCACTTCAGATATATGGATTTAACCATCTTAATCTATTCTGGCAATAA
ACGGTGTCCATCATGTCCAGATAGGATACCGCTTTGATTGATGGGGTGAT
TACGTTTGTATGTGGAAGTCAGTGTCCGTTCTGGTTCTGGAATAGCCCAG
TTTAAGATAATGGTTTGATTTATGCAGTAAATAAACTTTTTACTTTGTAT
AACTGCCCCTGATGAATGTTTTACTGTTAATATTGTTGATTCTCCACTGT
AAAACACTTGCTTCCGAAATGAATTACCTACCAGCAATAAAAAAAAAAAA
AAAAAAAA
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