FC925303

Overview
NameFC925303
Unique NameFC925303
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length477
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3791 contig Ccv1_Contig3791:1..477. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC925303 vs. ExPASy Swiss-Prot
Match: XSP1_ARATH (Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.684e-12
Identity = 39/100 (39.00%), Postives = 57/100 (57.00%), Query Frame = 3 
Query:   51 NLNLPSI--TIPELKKSITV--SRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYSRLRVQGRYSFGNLFWEDGIHVVRIPLIV 338
            +LN P+I  T+   K S      R+VTNV P +SVYTA V+AP G  + VEP +L+F+   +K  FKV   ++    G+   G L W+   H VR P+++
Sbjct:  644 SLNYPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEPQSLSFSKASQKRSFKVVVKAKQMTPGKIVSGLLVWKSPRHSVRSPIVI 743
The following BLAST results are available for this feature:
BLAST of FC925303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
XSP1_ARATH9.684e-1239.00Xylem serine proteinase 1 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YH03FM1 TF Citrus clementina cDNA clone KN0AAP8YH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925303 ID=FC925303; Name=FC925303; organism=Citrus clementina; type=EST; length=477bp
TGAATAGAGCTTCCACCACATGCAATGATAAATCAACCAAGTTCCTTGTA
AATCTAAATCTGCCTTCAATCACCATCCCTGAGCTCAAGAAGAGTATAAC
TGTATCAAGACAAGTTACAAATGTCAGTCCCATGAACTCTGTCTATACTG
CTCGTGTTCAAGCTCCTGCAGGAACTACTGTTAGAGTAGAGCCATCAACA
TTGACATTTAATTCTACAAGAAAGAAGCTGAAGTTTAAGGTAACTTTTTA
TTCCCGGCTAAGAGTTCAAGGTAGATACTCCTTTGGAAATCTGTTCTGGG
AAGATGGTATACATGTAGTGAGGATACCATTGATAGTTCGAACCATCATC
GATGAATTTTATGCTGAAACATGACCCAAAGTCTGTAAGATGCATCACTT
TTCATTAGTAATTTATCATTAGCTGCTGCATCCTTCAAGTTAAACCCGCA
GTTCAAGCTTAATTAGCAAACGAATGA
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