FC925304

Overview
NameFC925304
Unique NameFC925304
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10612 contig Ccv1_Contig10612:1462..2158. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925304 vs. ExPASy Swiss-Prot
Match: LHY_ARATH (Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.835e-35
Identity = 97/233 (41.63%), Postives = 120/233 (51.50%), Query Frame = 3
Query:    3 QDDYRSFLHISSAFSSLIVSTLLQNPXXXXXXXXXXTFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMXXXXXXXXXXXXXXXXXHGLLPLCAPFHTPFTCPPACATAVSSMDTAQVPAAKTDKNDNTPPNPALKDHQPDLEYSEALQAQNSASKSLTVLTSDSEESASAKLKMELKATDH--EKNSEENELHDSNKTKNRKQVDRSSCGSNTPSSSEVETDALEKQEKGKE 695
            QDDYRSFL ISS FS+LI+STLLQNP          + WPY ++  S DS T           SSPPS+                 HGLLP+CAP   P TC P    AV +    ++     D  +NT         QP  + + ALQ QN ASKS    + DS+E+   KL  + K  D   E+      +HDSN  + +  VDRSSCGSNTPS S+ ETDAL+K EK KE
Sbjct:  284 QDDYRSFLQISSTFSNLIMSTLLQNPAAHAAATFAASVWPYASVGNSGDSST--------PMSSSPPSITAIAAATVAAATAWWASHGLLPVCAP--APITCVPFSTVAVPTPAMTEM-----DTVENT---------QPFEKQNTALQDQNLASKSPASSSDDSDETGVTKLNADSKTNDDKIEEVVVTAAVHDSNTAQKKNLVDRSSCGSNTPSGSDAETDALDKMEKDKE 492          
BLAST of FC925304 vs. ExPASy Swiss-Prot
Match: CCA1_ARATH (Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15
Identity = 73/227 (32.16%), Postives = 102/227 (44.93%), Query Frame = 3
Query:   39 AFSSLIVSTLLQNPXXXXXXXXXXTFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMXXXXXXXXXXXXXXXXXHGLLPLCAPF-------HTPFTCPPACATAVSSMDTAQVPAAKTDKNDNTPPNPALKDHQPDLEYSEALQAQNSASKSLTVLTSDSEESASAKLKMELKATDHEKNSE--ENELHDSNKTKNRKQVDRSSCGSNTPSSS-EVETDALEKQEKG 689
            +F + I+STLLQ P          +FWP    ++S  SP            +SPP++                 +GLLPLCAP        H P T  P+C    +   T Q  + ++ +                 E+SEA +A++S       L S+  E+ S       K   HE+ S   E++   S+   +RKQVDRSSCGSNTPSSS +VE DA E+QE G
Sbjct:  263 SFPNHIMSTLLQTPALYTAATFASSFWP---PDSSGGSPV---------PGNSPPNLAAMAAATVAAASAWWAANGLLPLCAPLSSGGFTSHPPSTFGPSCDVEYTKASTLQHGSVQSREQ----------------EHSEASKARSS-------LDSEDVENKS-------KPVCHEQPSATPESDAKGSDGAGDRKQVDRSSCGSNTPSSSDDVEADASERQEDG 447          
The following BLAST results are available for this feature:
BLAST of FC925304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
LHY_ARATH2.835e-3541.63Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV... [more]
CCA1_ARATH1.910e-1532.16Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YC02FM1 TF Citrus clementina cDNA clone KN0AAP11YC02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925304 ID=FC925304; Name=FC925304; organism=Citrus clementina; type=EST; length=697bp
ATCAAGATGACTATCGATCATTTCTACACATCTCATCCGCATTTTCAAGT
CTTATAGTGTCTACTCTGTTACAAAACCCTGCGGCCCATGCTGCAGCAAG
CTTTGCTGCTACATTTTGGCCCTATACAAATATGGAAACTTCAGCTGATT
CTCCTACATGTCCGCAGGGTGGTTTCTTATCTAGACAAATGAGCTCCCCG
CCAAGTATGGCAGCTATTGCCGCAGCCACTGTAGCAGCTGCCACTGCATG
GTGGGCAGCACATGGACTGCTTCCCTTGTGTGCCCCATTTCATACTCCTT
TTACCTGCCCTCCTGCTTGTGCAACTGCAGTTTCATCAATGGATACTGCA
CAAGTTCCGGCAGCCAAGACAGACAAAAATGACAATACTCCTCCAAATCC
TGCCTTAAAGGATCATCAACCAGACCTTGAATATTCTGAAGCTTTGCAAG
CTCAAAATTCAGCGTCTAAATCACTCACTGTGTTAACATCAGATTCCGAG
GAGAGTGCAAGTGCGAAGCTTAAAATGGAACTGAAAGCTACTGATCATGA
GAAGAATTCTGAAGAAAATGAGCTTCATGATTCAAACAAAACAAAAAACA
GAAAGCAGGTAGACCGTTCATCATGCGGTTCCAATACACCTTCTAGCAGT
GAAGTTGAAACTGATGCATTAGAAAAGCAAGAGAAAGGCAAAGAGGA
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