FC925306

Overview
NameFC925306
Unique NameFC925306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length446
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5536 contig Ccv1_Contig5536:106..551. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC925306 vs. ExPASy Swiss-Prot
Match: XRN4_ARATH (5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.356e-35
Identity = 71/122 (58.20%), Postives = 86/122 (70.49%), Query Frame = 3 
Query:   84 QIILYYQXXXXXXXXDRFAWEIDVNTSGGMNGYIWLCERNGFRSIIPSPVKGLPDIERNPAINVTYLNPQKHRHIPEPPKGATIPAKTLKPIDIKPFPTLWHEDNS-RRQQGRERPQVPGAI 446
            +I+ YY         +   W ID N+S GMNG++W  ERNGF++ + SPV GLP IE+N A+NVTYL P KH HI EPP+GA IP K L  +DIKPFP LWHEDNS RR+Q R+RPQV GAI
Sbjct:  624 RILQYYHFYQHMPPHECLPWMIDPNSSQGMNGFLWFSERNGFQTRVDSPVNGLPCIEQNRALNVTYLCPAKHSHISEPPRGAIIPDKILTSVDIKPFPPLWHEDNSNRRRQARDRPQVVGAI 745
[Close]
BLAST of FC925306 vs. ExPASy Swiss-Prot
Match: XRN3_ARATH (5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.738e-15
Identity = 45/120 (37.50%), Postives = 56/120 (46.67%), Query Frame = 3 
Query:  135 FAWEIDVNTSGGMNGYIWLCERNGFRSIIPSPVKGLPDIERNPAINVTYLNPQKHRHIPEPPKGATIPAKTLKPIDIKPFPTLWHEDNSRR----------------QQGRERPQVPGAI 446
            F  +I    S GMNGY+  C       +  SP++G+ DI  N  I   Y  P  H HI  PP G   P KT+   D+KP P LWHEDN RR                 QGR+ P  PG++
Sbjct:  737 FKVKIKPKLSDGMNGYLTPCSGETHPPVFRSPMEGMEDILTNQVICCIYRLPDAHEHITRPPPGVIFPKKTVDIGDLKPPPALWHEDNGRRPMHNNHGMHNNHGMHNNQGRQNP--PGSV 854
The following BLAST results are available for this feature:
BLAST of FC925306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
XRN4_ARATH1.356e-3558.205'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN... [more]
XRN3_ARATH7.738e-1537.505'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YC03FM1 TF Citrus clementina cDNA clone KN0AAP11YC03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925306 ID=FC925306; Name=FC925306; organism=Citrus clementina; type=EST; length=446bp
TGCCTTGCTTTGATTTATTGGGAATTTCCACCGTTCAAAAAGTTTTGGGC
CATGATTTTGGCAGGAAGCCTGCTTTGTATCCACAGATTATTTTGTACTA
CCAGCTCCACCATCCGTTGCCCCCTCCAGACAGATTCGCTTGGGAAATTG
ATGTAAATACCAGTGGGGGAATGAATGGATACATTTGGTTATGTGAGAGA
AATGGTTTCAGAAGCATCATCCCTTCACCTGTCAAGGGGCTGCCCGACAT
TGAGCGTAACCCAGCCATAAATGTTACGTATCTTAACCCTCAAAAACATA
GACACATCCCAGAACCTCCCAAGGGCGCAACCATACCTGCTAAGACCCTA
AAACCAATAGACATTAAACCATTTCCTACTCTTTGGCATGAAGACAATAG
TCGGCGCCAGCAAGGCAGGGAGAGGCCACAAGTGCCTGGAGCCATA
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