FC925307

Overview
NameFC925307
Unique NameFC925307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length761
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925307_ssr56 microsatellite FC925307_ssr56:56..67. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig165 contig Ccv1_Contig165:18..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925307 vs. ExPASy Swiss-Prot
Match: UMPK_ARATH (Uridylate kinase OS=Arabidopsis thaliana GN=PYR6 PE=1 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.426e-86
Identity = 154/180 (85.56%), Postives = 170/180 (94.44%), Query Frame = 1
Query:  208 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYETKGKVRKIDAAKPVAEVFDAVKAVFTPKDEK 747
            LGGPGSGKGTQCA IVEH+GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA++E+GNDKFLIDGFPRNEENRAAFE VT+IEP+FVLFFDC EEEME+R+L RNQGREDDN+ETIRKRFKVFLESSLPV+ YYE KGKVRKI+AAKP+  VF+ VKA+F+P+ EK
Sbjct:   20 LGGPGSGKGTQCAYIVEHYGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAIQENGNDKFLIDGFPRNEENRAAFEKVTEIEPKFVLFFDCPEEEMEKRLLGRNQGREDDNIETIRKRFKVFLESSLPVIHYYEAKGKVRKINAAKPIEAVFEEVKAIFSPEAEK 199          
BLAST of FC925307 vs. ExPASy Swiss-Prot
Match: KAD_PRUAR (Adenylate kinase OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.987e-60
Identity = 110/176 (62.50%), Postives = 139/176 (78.98%), Query Frame = 1
Query:  208 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYETKGKVRKIDAAKPVAEVFDAVKAVFTP 735
            LGGPGSGKGTQCA IVE FG+TH+SAGDLLR EI SGS  G++I + I+EGKIVPS+VT++L+QK ME S N KFLIDGFPR+EENR AFE     EP+ VLFFDC E+EM +R+LNRNQGR DDN++TI+KR ++F E + PV+ YY  +GK+ KI+A   V E+F+ V+ +F P
Sbjct:   53 LGGPGSGKGTQCAKIVEAFGFTHVSAGDLLRREIASGSAYGSVILSTIREGKIVPSQVTVELIQKEMESSDNYKFLIDGFPRSEENRKAFEQTIGAEPDVVLFFDCPEQEMVKRVLNRNQGRVDDNIDTIKKRLEIFDELNWPVINYYSQRGKLHKINAVGTVDEIFEKVRPIFAP 228          
BLAST of FC925307 vs. ExPASy Swiss-Prot
Match: KCY_DICDI (Cytidylate kinase OS=Dictyostelium discoideum GN=pyrK PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 4.187e-46
Identity = 96/178 (53.93%), Postives = 127/178 (71.35%), Query Frame = 1
Query:  208 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYETKGKVRKIDAAKPVAEVFDAVKAVF 729
            LGGPGSGKGTQCANIV  FG+ HLSAGDLLR E +SGS++G MI  MIK G+IVPS VT+KLL+ A++ +    FL+DGFPRNEEN  ++E   K  ++ +FVLFFDC EE M +R+L R +  GR DDN+E+I+KRF  F   +  V+ +Y    KV+ I A + V EV++ V+ +F
Sbjct:   13 LGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLF 190          
BLAST of FC925307 vs. ExPASy Swiss-Prot
Match: KCY_CHICK (UMP-CMP kinase OS=Gallus gallus GN=CMPK1 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.187e-46
Identity = 99/184 (53.80%), Postives = 127/184 (69.02%), Query Frame = 1
Query:  208 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-SGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-----SGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYETKGKVRKIDAAKPVAEVFDAVKAVF 729
            LGGPG+GKGTQCA IVE +GYTHLSAGDLLR E K  GS+ G +I+N IKEG+IVP E+TI LL++AM++     S  +KFLIDGFPRNE+N   +      K +  FVLFFDC  E    R L R  + GR DDN E++ KR   +L+S+ P++  YE  GKVR++DA+K V EVF+ V  +F
Sbjct:    9 LGGPGAGKGTQCARIVEKYGYTHLSAGDLLRDERKRPGSQYGELIENYIKEGEIVPVEITISLLKRAMDQTMAANSQKNKFLIDGFPRNEDNLQGWNKTMDGKADVSFVLFFDCDNEICIGRCLERGKSSGRSDDNRESLEKRIHTYLQSTRPIIDLYERMGKVRRVDASKSVDEVFEKVVQIF 192          
BLAST of FC925307 vs. ExPASy Swiss-Prot
Match: KCY_XENLA (UMP-CMP kinase OS=Xenopus laevis GN=cmpk1 PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 5.469e-46
Identity = 97/184 (52.72%), Postives = 127/184 (69.02%), Query Frame = 1
Query:  208 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAME-----ESGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYETKGKVRKIDAAKPVAEVFDAVKAVF 729
            LGGPG+GKGTQC  IV+ +GYTHLSAGDLLR E K   S+ G +I++ I++GKIVP E+TI LLQ+AME     ++   KFLIDGFPRNE+N   +E     K +  FVLFFDC  E    R L R +  GR DDN E++ KR + +L+S+ P++  YE +GKVRK+DA+K V EVF  V+ +F
Sbjct:    9 LGGPGAGKGTQCERIVQKYGYTHLSAGDLLRDERKKPDSQYGELIESYIRDGKIVPVEITISLLQRAMERTMAFDANKHKFLIDGFPRNEDNLQGWERTMNGKADVSFVLFFDCDNETCIERCLERGKSSGRSDDNRESLEKRIQTYLQSTRPIIDLYEKRGKVRKVDASKSVDEVFTKVQNIF 192          
BLAST of FC925307 vs. ExPASy Swiss-Prot
Match: KCY_XENTR (UMP-CMP kinase OS=Xenopus tropicalis GN=cmpk1 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 4.629e-45
Identity = 97/184 (52.72%), Postives = 128/184 (69.57%), Query Frame = 1
Query:  208 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES----GND-KFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYETKGKVRKIDAAKPVAEVFDAVKAVF 729
            LGGPG+GKGTQC  IV+ +GYTHLSAGDLLR E K   S+ G +I++ I++G+IVP E+TI LLQ+AME++    GN  KFLIDGFPRNE+N   +E     K +  FVLFFDC  E    R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+K+DA+K V EVF  V+ +F
Sbjct:    9 LGGPGAGKGTQCERIVQKYGYTHLSAGDLLRDERKKPDSQYGELIESYIRDGRIVPVEITISLLQRAMEQTMALDGNKHKFLIDGFPRNEDNLQGWERTMNGKADVSFVLFFDCDNETCIERCLERGKSSGRSDDNRESLEKRIQTYLQSTRPIIDLYEKTGKVKKVDASKSVDEVFTKVQDIF 192          
BLAST of FC925307 vs. ExPASy Swiss-Prot
Match: KCY_HUMAN (UMP-CMP kinase OS=Homo sapiens GN=CMPK1 PE=1 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 1.031e-44
Identity = 96/184 (52.17%), Postives = 127/184 (69.02%), Query Frame = 1
Query:  208 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYETKGKVRKIDAAKPVAEVFDAVKAVF 729
            LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGKIVP E+TI LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFDC+ E    R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+KIDA+K V EVFD V  +F
Sbjct:    9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIF 192          
BLAST of FC925307 vs. ExPASy Swiss-Prot
Match: KCY_BOVIN (UMP-CMP kinase OS=Bos taurus GN=CMPK1 PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 1.031e-44
Identity = 96/184 (52.17%), Postives = 127/184 (69.02%), Query Frame = 1
Query:  208 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYETKGKVRKIDAAKPVAEVFDAVKAVF 729
            LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IK+GKIVP E+TI LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFDC+ E    R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKVRKIDA+K V EVFD V  +F
Sbjct:    9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVRKIDASKSVDEVFDEVVKIF 192          
BLAST of FC925307 vs. ExPASy Swiss-Prot
Match: KCY_DANRE (UMP-CMP kinase OS=Danio rerio GN=cmpk1 PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.759e-44
Identity = 98/188 (52.13%), Postives = 131/188 (69.68%), Query Frame = 1
Query:  208 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAF--EAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYETKGKVRKIDAAKPVAEVFDAVKAVFTPKD 741
            LGGPG+GKGTQCA IVE++ YTHLSAGDLLR E  ++ SE G +I + IKEGKIVP ++TI LL+KAMEE+        +FLIDGFPRN++N   +  E   K + +FVLFFDCS E    R L R  + GR DDN E++ KR + +L+S+ P+++ YE +GKV++IDA++ V EVF  VK +    D
Sbjct:    9 LGGPGAGKGTQCARIVENYSYTHLSAGDLLREERSRTDSEFGQLIDSYIKEGKIVPVQITINLLRKAMEETMKADEKKFRFLIDGFPRNQDNLQGWNTEMDGKADVKFVLFFDCSNEVCIDRCLERGKSSGRTDDNRESLEKRIQTYLQSTRPIIELYEKQGKVQRIDASRSVDEVFADVKNILEKDD 196          
BLAST of FC925307 vs. ExPASy Swiss-Prot
Match: KCY_PIG (UMP-CMP kinase OS=Sus scrofa GN=CMPK1 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.298e-44
Identity = 95/184 (51.63%), Postives = 127/184 (69.02%), Query Frame = 1
Query:  208 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYETKGKVRKIDAAKPVAEVFDAVKAVF 729
            LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IK+GKIVP E+TI LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFDC+ E    R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+KIDA+K V EVFD V  +F
Sbjct:    9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVKIF 192          
The following BLAST results are available for this feature:
BLAST of FC925307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
UMPK_ARATH2.426e-8685.56Uridylate kinase OS=Arabidopsis thaliana GN=PYR6 P... [more]
KAD_PRUAR2.987e-6062.50Adenylate kinase OS=Prunus armeniaca PE=2 SV=1[more]
KCY_DICDI4.187e-4653.93Cytidylate kinase OS=Dictyostelium discoideum GN=p... [more]
KCY_CHICK4.187e-4653.80UMP-CMP kinase OS=Gallus gallus GN=CMPK1 PE=2 SV=1[more]
KCY_XENLA5.469e-4652.72UMP-CMP kinase OS=Xenopus laevis GN=cmpk1 PE=2 SV=... [more]
KCY_XENTR4.629e-4552.72UMP-CMP kinase OS=Xenopus tropicalis GN=cmpk1 PE=2... [more]
KCY_HUMAN1.031e-4452.17UMP-CMP kinase OS=Homo sapiens GN=CMPK1 PE=1 SV=3[more]
KCY_BOVIN1.031e-4452.17UMP-CMP kinase OS=Bos taurus GN=CMPK1 PE=2 SV=2[more]
KCY_DANRE1.759e-4452.13UMP-CMP kinase OS=Danio rerio GN=cmpk1 PE=2 SV=2[more]
KCY_PIG2.298e-4451.63UMP-CMP kinase OS=Sus scrofa GN=CMPK1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH05FM1 TF Citrus clementina cDNA clone KN0AAP8YH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925307 ID=FC925307; Name=FC925307; organism=Citrus clementina; type=EST; length=761bp
AAACTAACATTGGCTATTGGCATCCCTCTGCCTTCTTTCTTTCCCTCCAT
ATTCTTCTCTCTCTCTCCAAACAAAACAACGCTCGCAATTCGCTAAGATC
GGTTATTCAGACTGAGTTAGTTGGCGCTGATGGGAACTGTGGTTGAAACT
CCTGTCAAGGAAGCAGATGCTACCGTAACTGTGAAGAAGCCCACTGTTGT
TTTTGTTTTGGGTGGACCAGGCAGTGGAAAAGGAACCCAGTGCGCAAACA
TTGTTGAACACTTTGGATACACCCATCTCAGTGCTGGTGATCTTCTCAGA
GCCGAAATCAAATCTGGCTCTGAAAATGGAACCATGATTCAGAACATGAT
TAAAGAGGGAAAAATCGTTCCTTCAGAGGTCACAATTAAGCTTCTCCAAA
AAGCAATGGAGGAAAGTGGAAATGATAAATTTCTCATCGATGGTTTTCCC
AGAAACGAGGAAAATCGTGCTGCATTTGAAGCTGTTACCAAAATTGAGCC
AGAATTCGTTCTGTTTTTTGACTGTTCTGAGGAGGAGATGGAGAGGCGCA
TTTTGAATAGGAATCAGGGAAGAGAAGATGATAACGTTGAGACAATTAGG
AAGCGGTTTAAGGTTTTCTTAGAATCTAGTCTCCCTGTGGTTCAATATTA
TGAAACTAAGGGTAAAGTTCGGAAGATTGATGCTGCAAAGCCTGTTGCAG
AGGTTTTTGATGCTGTTAAAGCTGTTTTTACCCCAAAAGATGAAAAAGCT
GCTGGTTAGGT
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