FC925309

Overview
NameFC925309
Unique NameFC925309
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length519
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig410 contig Ccv1_Contig410:22..538. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925309 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 4.375e-54
Identity = 102/116 (87.93%), Postives = 110/116 (94.83%), Query Frame = 1
Query:   88 AAEEGQVIGCHTVEAWNE*LQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA*KEELQQTIAKHLATAS 435
            AAEEGQVIGCHTVEAWNE LQK N+TK L+VVDFTASWCGPCRFIAPFLAELAKKLPNV FLKVDVDELK+VA +WAVE+MPTFMFLKEGKI+DKVVGA K+ELQQTIAKH+ATAS
Sbjct:    2 AAEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKHMATAS 117          
BLAST of FC925309 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 2.654e-51
Identity = 96/113 (84.96%), Postives = 105/113 (92.92%), Query Frame = 1
Query:   88 AAEEGQVIGCHTVEAWNE*LQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA*KEELQQTIAKHLA 426
            A+EEGQVI CHTVE WNE LQK+NE+K LVVVDFTASWCGPCRFIAPF A+LAKKLPNVLFLKVD DELKSVA+DWA++AMPTFMFLKEGKI+DKVVGA K+ELQ TIAKHLA
Sbjct:    2 ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114          
BLAST of FC925309 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 5.534e-49
Identity = 94/115 (81.74%), Postives = 104/115 (90.43%), Query Frame = 1
Query:   91 AEEGQVIGCHTVEAWNE*LQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA*KEELQQTIAKHLATAS 435
            AEEGQVIG HTV+AWNE LQK  + K+L+VVDFTASWCGPC+FIA F AELAKK+P V FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA K+ELQQTIAKH+++ S
Sbjct:    2 AEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKHISSTS 116          
BLAST of FC925309 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.176e-45
Identity = 84/119 (70.59%), Postives = 103/119 (86.55%), Query Frame = 1
Query:   79 EMAAAEEGQVIGCHTVEAWNE*LQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA*KEELQQTIAKHLATAS 435
            +  ++EEGQV GCH VE WNE  +K  ETK+LVVVDFTASWCGPCRFIAP LA++AKK+P+V+FLKVDVDELK+V+ +W+VEAMPTF+F+K+GK VD+VVGA KEELQQTI KH A A+
Sbjct:    5 DATSSEEGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHAAPAT 123          
BLAST of FC925309 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.670e-37
Identity = 68/110 (61.82%), Postives = 92/110 (83.64%), Query Frame = 1
Query:   91 AEEGQVIGCHTVEAWNE*LQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA*KEELQQTIAKH 420
            A EG+VI CHT+E WNE ++ +NE+K+L+V+DFTASWC PCRFIAP  AE+AKK  NV+F K+DVDEL++VA ++ VEAMPTF+F+KEG I+D+VVGA K+E+ + + KH
Sbjct:    2 AGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          
BLAST of FC925309 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.483e-35
Identity = 67/110 (60.91%), Postives = 88/110 (80.00%), Query Frame = 1
Query:   91 AEEGQVIGCHTVEAWNE*LQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA*KEELQQTIAKH 420
            AEE QVI CHTV+ WNE  QK+ ++ +L+V+DFTASWCGPCR I P+++ELAKK P+V F KVDVD+LK VA ++ VEAMP+F+ LKEG+ V+++VGA K+EL   IA H
Sbjct:    2 AEEAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVH 111          
BLAST of FC925309 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 5.940e-35
Identity = 70/118 (59.32%), Postives = 90/118 (76.27%), Query Frame = 1
Query:   88 AAEEGQVIGCHTVEAWNE*LQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA*KEELQQTIAKHLATASA 438
            AAEEGQVIGCHT + W   L K+ E+ +L+V+DFTASWC PCR IAP   +LAKK + + +F KVDVDEL+SVA ++ VEAMPTF+F+K G++VDK+VGA KE+LQ  I KH    +A
Sbjct:    2 AAEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHTGVTTA 119          
BLAST of FC925309 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 7.758e-35
Identity = 69/117 (58.97%), Postives = 87/117 (74.36%), Query Frame = 1
Query:   88 AAEEGQVIGCHTVEAWNE*LQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA*KEELQQTIAKHLATASA 438
            AAEEG VI CH  + ++  + K+ E  ++V++DFTASWCGPCRFIAP  AE AKK P  +FLKVDVDELK VA  + VEAMPTF+F+K+G   DKVVGA K++LQ TI KH+   +A
Sbjct:    2 AAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
BLAST of FC925309 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 7.758e-35
Identity = 69/117 (58.97%), Postives = 87/117 (74.36%), Query Frame = 1
Query:   88 AAEEGQVIGCHTVEAWNE*LQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA*KEELQQTIAKHLATASA 438
            AAEEG VI CH  + ++  + K+ E  ++V++DFTASWCGPCRFIAP  AE AKK P  +FLKVDVDELK VA  + VEAMPTF+F+K+G   DKVVGA K++LQ TI KH+   +A
Sbjct:    2 AAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
BLAST of FC925309 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 7.758e-35
Identity = 69/118 (58.47%), Postives = 91/118 (77.12%), Query Frame = 1
Query:   88 AAEEGQVIGCHTVEAWNE*LQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA*KEELQQTIAKHLATASA 438
            AAEEGQVIGCH ++ W   L  + ++ +L+V+DFTASWC PCR IAP  A+LAKK + + +F KVDVDEL++VA ++ VEAMPTF+ +K+G +VDKVVGA KE+L  TIAKH   A+A
Sbjct:    2 AAEEGQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKHTGVATA 119          
The following BLAST results are available for this feature:
BLAST of FC925309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
TRXH_RICCO4.375e-5487.93Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH1_ARATH2.654e-5184.96Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_TOBAC5.534e-4981.74Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_TOBAC2.176e-4570.59Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH5_ARATH1.670e-3761.82Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_FAGES3.483e-3560.91Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH4_ARATH5.940e-3559.32Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_ORYSJ7.758e-3558.97Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI7.758e-3558.97Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH2_BRANA7.758e-3558.47Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH07FM1 TF Citrus clementina cDNA clone KN0AAP8YH07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925309 ID=FC925309; Name=FC925309; organism=Citrus clementina; type=EST; length=519bp
TCACCAAGAGCACTTTAGCGAGGGAGAGAATAGAAGTATCGTTGGGTGGA
GTAGTGGTGGTAATAACCGCGGAAAGCAGAAATGGCAGCAGCAGAAGAGG
GACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAACGAGTAGCTCCAG
AAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATTTCACTGCTTCATG
GTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCAGAGCTGGCCAAGA
AACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAGT
GTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGAA
AGAGGGGAAGATTGTGGACAAGGTGGTTGGAGCATAGAAAGAGGAACTGC
AGCAGACTATTGCCAAGCATCTGGCAACTGCTTCTGCCTAATAAGTTTAT
AACTTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGACCTCCAAATATG
CTATCAGTCTGTAATTTTA
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