FC925317

Overview
NameFC925317
Unique NameFC925317
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length462
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12748 contig Ccv1_Contig12748:278..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC925317 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 6.152e-29
Identity = 65/121 (53.72%), Postives = 79/121 (65.29%), Query Frame = 1 
Query:   37 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLVVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 399
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of FC925317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN6.152e-2953.72Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YH12FM1 TF Citrus clementina cDNA clone KN0AAP8YH12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925317 ID=FC925317; Name=FC925317; organism=Citrus clementina; type=EST; length=462bp
GATTTAGAAACTCTTAGCTAAATTTTAAATTTAAAGATGCTAGAGAAGCT
TTGGGACGATGTTGTGGCAGGGCCTCAGCCTGATCGTGGCCTTGGCAGGC
TGAGGAAAATCACCACAACACCCTTAGTAGTCAAAGAGGGTGGTGAGGCG
GAGTCGTCGTCGGGCAAGTTCCAGAGGTCTCTGTCAATGCCAGCGAGTCC
AGGGGCACCGTCGACGCCAGTGACGCCGACGACTCCGCTGTCGGCGCGTA
AGGACAACGTGTGGAGGAGCGTGTTTCACCCCGGTAGCAACCTTGCTACT
AGGGGTATCGGTGCAGAGGTCTTTGACAAGCCCACACATCCTAACTCTCC
CACTGTTTATGACTGGCTTTACAGTGGGGAGACTAGGAGCAAGCATCATC
ACTGAGTGGATGATACGCTCCAGCGATGTAAATGAATGTGATGGGTCACC
AACTCACCGGAT
back to top