FC925354

Overview
NameFC925354
Unique NameFC925354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length308
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1985 contig Ccv1_Contig1985:1..308. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.462e-38
Identity = 77/90 (85.56%), Postives = 83/90 (92.22%), Query Frame = 2
Query:    2 KQLPFVDFTASWCGPCRFIAPFLAELANILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 271
            K L  VDFTASWCGPCRFIAPFLAELA  LPNV FLKVDVDELK+VA +WAVE+MPTFMFLKEGKI+DKVVGAKK+ELQQTIAKH+ATAS
Sbjct:   28 KGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKHMATAS 117          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.643e-37
Identity = 73/87 (83.91%), Postives = 79/87 (90.80%), Query Frame = 2
Query:    2 KQLPFVDFTASWCGPCRFIAPFLAELANILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 262
            K L  VDFTASWCGPCRFIAPF A+LA  LPNVLFLKVD DELKSVA+DWA++AMPTFMFLKEGKI+DKVVGAKK+ELQ TIAKHLA
Sbjct:   28 KTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.064e-37
Identity = 74/90 (82.22%), Postives = 81/90 (90.00%), Query Frame = 2
Query:    2 KQLPFVDFTASWCGPCRFIAPFLAELANILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 271
            K+L  VDFTASWCGPC+FIA F AELA  +P V FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKK+ELQQTIAKH+++ S
Sbjct:   27 KKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKHISSTS 116          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.398e-33
Identity = 65/90 (72.22%), Postives = 80/90 (88.89%), Query Frame = 2
Query:    2 KQLPFVDFTASWCGPCRFIAPFLAELANILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 271
            K+L  VDFTASWCGPCRFIAP LA++A  +P+V+FLKVDVDELK+V+ +W+VEAMPTF+F+K+GK VD+VVGAKKEELQQTI KH A A+
Sbjct:   34 KKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHAAPAT 123          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.356e-27
Identity = 55/86 (63.95%), Postives = 66/86 (76.74%), Query Frame = 2
Query:   17 VDFTASWCGPCRFIAPFLAELANILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 274
            +DFTASWCGPCRFIAP  AE A   P  +FLKVDVDELK VA  + VEAMPTF+F+K+G   DKVVGA+K++LQ TI KH+   +A
Sbjct:   33 IDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.356e-27
Identity = 55/86 (63.95%), Postives = 66/86 (76.74%), Query Frame = 2
Query:   17 VDFTASWCGPCRFIAPFLAELANILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 274
            +DFTASWCGPCRFIAP  AE A   P  +FLKVDVDELK VA  + VEAMPTF+F+K+G   DKVVGA+K++LQ TI KH+   +A
Sbjct:   33 IDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.267e-26
Identity = 54/90 (60.00%), Postives = 69/90 (76.67%), Query Frame = 2
Query:    2 KQLPFVDFTASWCGPCRFIAPFLAELANILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 271
            K+L  VDFTA+WCGPCR I P   EL+   P + FLKVDVDEL+ VA +W VEAMPTF+F+K+GK VDKVVGAKK++L++ +A   A A+
Sbjct:   26 KRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKVAALAAAAT 115          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.073e-25
Identity = 51/85 (60.00%), Postives = 68/85 (80.00%), Query Frame = 2
Query:    2 KQLPFVDFTASWCGPCRFIAPFLAELANILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 256
            K+L  +DFTASWC PCRFIAP  AE+A    NV+F K+DVDEL++VA ++ VEAMPTF+F+KEG I+D+VVGA K+E+ + + KH
Sbjct:   27 KKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 6.954e-25
Identity = 52/87 (59.77%), Postives = 65/87 (74.71%), Query Frame = 2
Query:    2 KQLPFVDFTASWCGPCRFIAPFLAELANILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 262
            K+L  +DFTASWCGPCR +AP  A+LA   P  +FLKVDVDELK +A  ++VEAMPTF+F+KEG + D+VVGA KEEL   +  H A
Sbjct:   40 KKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLHAA 126          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.083e-25
Identity = 53/91 (58.24%), Postives = 70/91 (76.92%), Query Frame = 2
Query:    5 QLPFVDFTASWCGPCRFIAPFLAELAN-ILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 274
            +L  +DFTASWC PCR IAP  A+LA   + + +F KVDVDEL++VA ++ VEAMPTF+ +K+G +VDKVVGA+KE+L  TIAKH   A+A
Sbjct:   29 KLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKHTGVATA 119          
The following BLAST results are available for this feature:
BLAST of FC925354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
TRXH_RICCO2.462e-3885.56Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH1_ARATH4.643e-3783.91Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_TOBAC6.064e-3782.22Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_TOBAC1.398e-3372.22Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH_ORYSJ4.356e-2763.95Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI4.356e-2763.95Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH_PICMA1.267e-2660.00Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH5_ARATH1.073e-2560.00Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_WHEAT6.954e-2559.77Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH2_BRANA9.083e-2558.24Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YG22FM1 TF Citrus clementina cDNA clone KN0AAP3YG22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925354 ID=FC925354; Name=FC925354; organism=Citrus clementina; type=EST; length=308bp
CAAACAGCTGCCTTTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCC
GTTTCATTGCTCCTTTCTTGGCAGAGCTGGCCAATATACTGCCTAATGTC
CTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTG
GGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTG
TGGACAAGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCC
AAGCATCTGGCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCC
TTTTGGCT
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