FC925371

Overview
NameFC925371
Unique NameFC925371
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length753
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11474 contig Ccv1_Contig11474:108..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC925371 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.248e-44
Identity = 87/154 (56.49%), Postives = 111/154 (72.08%), Query Frame = 2 
Query:  287 NLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQGPAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITL 748
            +L DFGGVGDG TLNT+AFQ AV  +SK G +GG QL VP G+WLT  F+LTSH TLFL  DA +LA ++   WP++ PLPSYG GR+    R+ S I G NL DV+ITG NGTI+GQG  WW+++    L  TR  L+++M+S+DI ISN+TL
Sbjct:   64 SLVDFGGVGDGQTLNTKAFQDAVSELSKYGSEGGAQLYVPAGKWLTGSFSLTSHFTLFLHRDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGTIDGQGGLWWQRFHGGKLKYTRPYLIELMYSADIQISNLTL 217
The following BLAST results are available for this feature:
BLAST of FC925371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PGLR_VITVI2.248e-4456.49Probable polygalacturonase OS=Vitis vinifera GN=GS... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YD07FM1 TF Citrus clementina cDNA clone KN0AAP11YD07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925371 ID=FC925371; Name=FC925371; organism=Citrus clementina; type=EST; length=753bp
CCTCTCCCATAATTGATGACTCTCAAAACTAAATCCTAAAAAAATAAAAA
AACAAATGGTGGAGATATTATCGTTAGGGCGGTTTCACTTGCACCAAAAC
CGACCGGACCTGCGCCGGTGGGTCCCAGCATTCCTCTCCTCTCACAAGAC
CCTCTTCACCGTGCTGTGGCTGGCCGCCTTCGCTTCTGTCTTCATCTGGC
AGCGAAACGCCGTCGTTGGGGGCTTCTCGTTTCTCAGATGGGGCGTGGCT
TCGAGGCCGATCCCAAGGTTGAGACCCGTGGCGTTCAACTTGACGGATTT
CGGCGGAGTCGGCGACGGCGTTACTCTCAATACGGAGGCCTTTCAGAGGG
CGGTTTACGCGATTTCGAAGCTCGGAAAGAAAGGCGGTGGCCAGCTTAAT
GTGCCGCCTGGAAGGTGGCTTACTGCTCCTTTTAATTTAACTAGTCACAT
GACTCTGTTTCTTGCAGATGATGCTGAGATTCTAGCTATTGAGAATGAGA
AGTACTGGCCACTAATGCCTCCATTGCCTTCATATGGTTATGGGAGAGAA
CATCATGGCCCTCGGTTTGGGAGTTTCATCCATGGTCAAAACCTCAAAGA
TGTTGTAATAACAGGGCATAATGGTACTATCAATGGACAAGGACCAGCAT
GGTGGAAGAAATATCGCCAAAAGCTTCTTAATAACACTAGGGGCCCACTT
GTGCAGATAATGTGGTCTAGTGACATTCTCATCTCTAATATAACTTTGCG
TGA
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