FC925372

Overview
NameFC925372
Unique NameFC925372
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length411
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3800 contig Ccv1_Contig3800:1..411. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925372 vs. ExPASy Swiss-Prot
Match: HSP7S_PEA (Stromal 70 kDa heat shock-related protein, chloroplastic OS=Pisum sativum GN=HSP70 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.535e-22
Identity = 66/115 (57.39%), Postives = 75/115 (65.22%), Query Frame = 1
Query:   76 STTQIHSLGNIPLSSRRIKAASFQSSAPRTAFFGQALGRKPHFGLPNAAFLKLNNE---KNNTRRRCNVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVV 411
            S+ QIH LG    SS  +K  S  S   +T FFGQ L    H     AAF KL+++   K  T        +RVV+EKVVGIDLGTTNSAVAAMEGGKPTI+TNAEGQRTTPSVV
Sbjct:    3 SSAQIHGLGTASFSS--LKKPSSISGNSKTLFFGQRLNSN-HSPFTRAAFPKLSSKTFKKGFT--------LRVVSEKVVGIDLGTTNSAVAAMEGGKPTIITNAEGQRTTPSVV 106          
BLAST of FC925372 vs. ExPASy Swiss-Prot
Match: DNAK_EMIHU (Chaperone protein dnaK OS=Emiliania huxleyi GN=dnaK PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.366e-12
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 1
Query:  298 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVV 411
            KVVGIDLGTTNS VA MEGGKPT++TN+EGQRTTPSVV
Sbjct:    3 KVVGIDLGTTNSVVAVMEGGKPTVITNSEGQRTTPSVV 40          
BLAST of FC925372 vs. ExPASy Swiss-Prot
Match: DNAK_CYAPA (Chaperone protein dnaK OS=Cyanophora paradoxa GN=dnaK-A PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.781e-12
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1
Query:  298 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVV 411
            K+VGIDLGTTNS VA MEGGKPT++TNAEG RTTPSVV
Sbjct:    3 KIVGIDLGTTNSVVAVMEGGKPTVITNAEGFRTTPSVV 40          
BLAST of FC925372 vs. ExPASy Swiss-Prot
Match: HSP7M_EMENI (Heat shock 70 kDa protein OS=Emericella nidulans GN=AN6010 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.157e-11
Identity = 47/100 (47.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:  112 LSSRRIKAASFQSSAPRTAFFGQALGRKPHFGLPNAAFLKLNNEKNNTRRRCNVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVV 411
            LSSR  +A       PRTA F +A    P F LP+ A  + N+ +              V  +V+GIDLGTTNSAVA MEG  P I+ NAEG RTTPSVV
Sbjct:    2 LSSRLSRAL------PRTAPFARA----PAFRLPSTAARRWNSTEEK------------VKGQVIGIDLGTTNSAVAVMEGKTPKIIENAEGARTTPSVV 79          
BLAST of FC925372 vs. ExPASy Swiss-Prot
Match: HSP7S_CUCMA (Stromal 70 kDa heat shock-related protein, chloroplastic (Fragment) OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.511e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1
Query:  295 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRT 396
            +KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRT
Sbjct:    1 QKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRT 34          
BLAST of FC925372 vs. ExPASy Swiss-Prot
Match: DNAK_THAPS (Chaperone protein dnaK OS=Thalassiosira pseudonana GN=dnaK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.973e-11
Identity = 31/38 (81.58%), Postives = 36/38 (94.74%), Query Frame = 1
Query:  298 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVV 411
            KVVGIDLGTTNS VAA+EGG+PT++TNAEG RTTPS+V
Sbjct:    3 KVVGIDLGTTNSVVAAIEGGQPTVITNAEGFRTTPSIV 40          
BLAST of FC925372 vs. ExPASy Swiss-Prot
Match: DNAK_PROMT (Chaperone protein dnaK OS=Prochlorococcus marinus (strain NATL2A) GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.973e-11
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 1
Query:  298 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVV 411
            KVVGIDLGTTNS VA MEGGKPT++ NAEG RTTPSVV
Sbjct:    3 KVVGIDLGTTNSCVAVMEGGKPTVIANAEGFRTTPSVV 40          
BLAST of FC925372 vs. ExPASy Swiss-Prot
Match: DNAK_PROM5 (Chaperone protein dnaK OS=Prochlorococcus marinus (strain MIT 9515) GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.973e-11
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 1
Query:  298 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVV 411
            KVVGIDLGTTNS VA MEGGKPT++ NAEG RTTPSVV
Sbjct:    3 KVVGIDLGTTNSCVAVMEGGKPTVIANAEGFRTTPSVV 40          
BLAST of FC925372 vs. ExPASy Swiss-Prot
Match: DNAK_LACSN (Chaperone protein dnaK OS=Lactobacillus sanfranciscensis GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.973e-11
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 1
Query:  286 VVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVV 411
            + + KV+GIDLGTTNSAVA MEGGKP I+TN +G RTTPSVV
Sbjct:    1 MASNKVIGIDLGTTNSAVAVMEGGKPKIITNPDGSRTTPSVV 42          
BLAST of FC925372 vs. ExPASy Swiss-Prot
Match: DNAK2_THEEB (Chaperone protein dnaK2 OS=Thermosynechococcus elongatus (strain BP-1) GN=dnaK2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.973e-11
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 1
Query:  298 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVV 411
            KVVGIDLGTTNS VA MEGGKPT++ NAEG RTTPSVV
Sbjct:    3 KVVGIDLGTTNSCVAVMEGGKPTVIANAEGFRTTPSVV 40          
The following BLAST results are available for this feature:
BLAST of FC925372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
HSP7S_PEA5.535e-2257.39Stromal 70 kDa heat shock-related protein, chlorop... [more]
DNAK_EMIHU1.366e-1286.84Chaperone protein dnaK OS=Emiliania huxleyi GN=dna... [more]
DNAK_CYAPA6.781e-1284.21Chaperone protein dnaK OS=Cyanophora paradoxa GN=d... [more]
HSP7M_EMENI1.157e-1147.00Heat shock 70 kDa protein OS=Emericella nidulans G... [more]
HSP7S_CUCMA1.511e-1197.06Stromal 70 kDa heat shock-related protein, chlorop... [more]
DNAK_THAPS1.973e-1181.58Chaperone protein dnaK OS=Thalassiosira pseudonana... [more]
DNAK_PROMT1.973e-1184.21Chaperone protein dnaK OS=Prochlorococcus marinus ... [more]
DNAK_PROM51.973e-1184.21Chaperone protein dnaK OS=Prochlorococcus marinus ... [more]
DNAK_LACSN1.973e-1173.81Chaperone protein dnaK OS=Lactobacillus sanfrancis... [more]
DNAK2_THEEB1.973e-1184.21Chaperone protein dnaK2 OS=Thermosynechococcus elo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YI09FM1 TF Citrus clementina cDNA clone KN0AAP8YI09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925372 ID=FC925372; Name=FC925372; organism=Citrus clementina; type=EST; length=411bp
TACAAACCCTTATCTTCTCCACCAAAAGAAAGTCAACATTTTCACAGACC
CACAATCACAAACATGGCGACGTTTTCAACAACCCAAATTCACTCTCTGG
GTAACATTCCTTTGTCTTCAAGAAGGATTAAAGCCGCTAGTTTTCAATCA
TCCGCTCCGAGAACCGCCTTTTTCGGCCAAGCACTGGGCAGAAAACCGCA
TTTTGGCCTCCCAAACGCGGCTTTTTTGAAGTTAAACAATGAAAAAAACA
ATACTAGAAGAAGGTGTAACGTGGGTCCGGTGAGAGTGGTGAATGAGAAG
GTGGTGGGGATTGATTTGGGGACGACGAATTCGGCGGTGGCGGCGATGGA
AGGGGGGAAGCCGACGATAGTGACGAATGCCGAGGGGCAACGGACGACGC
CGTCTGTGGTT
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