FC925373

Overview
NameFC925373
Unique NameFC925373
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13177 contig Ccv1_Contig13177:107..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC925373 vs. ExPASy Swiss-Prot
Match: GAT10_ARATH (GATA transcription factor 10 OS=Arabidopsis thaliana GN=GATA10 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.108e-23
Identity = 58/122 (47.54%), Postives = 87/122 (71.31%), Query Frame = 2 
Query:  125 MIGTNFMDEIDCGSFFDHIDDLLDFPNEDVEAGLPNADSNSFPSIWPTQSDSLP-GSDSVF-SNSSTDLSTQLSVPYEDIVQLEWLSNFVEDSFSGGSLTMSKQES-STITKDDSSHNQFQT 481
            MIGT+F +++DCG+FFD++DDL+DFP  D++ G    DS+SFP+IW T  D+ P  SD +F SN+++D S +L VP+EDIV++E   +FVE+     +L   K++S ST T   SSH+QF++
Sbjct:    1 MIGTSFPEDLDCGNFFDNMDDLMDFPGGDIDVGFGIGDSDSFPTIWTTHHDTWPAASDPLFSSNTNSDSSPELYVPFEDIVKVERPPSFVEE-----TLVEKKEDSFSTNTDSSSSHSQFRS 117
The following BLAST results are available for this feature:
BLAST of FC925373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GAT10_ARATH1.108e-2347.54GATA transcription factor 10 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YD08FM1 TF Citrus clementina cDNA clone KN0AAP11YD08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925373 ID=FC925373; Name=FC925373; organism=Citrus clementina; type=EST; length=691bp
CACATAACTCCACTTCACTCGCATTTCTTCCCTCTTTTCTCAAGGTTTTC
ACTTCAAATTCAGCTCTCGCTCTCTTTCTCTGCCGCCAACTCCACGAGGA
AAATTTTAATTATCAAACTCAAACATGATTGGAACAAACTTCATGGACGA
AATAGACTGCGGCAGCTTCTTTGATCACATAGACGATTTACTCGACTTCC
CAAATGAAGATGTCGAAGCCGGGTTACCCAACGCCGATTCTAACTCGTTC
CCCTCCATTTGGCCGACTCAGTCCGACTCCTTACCCGGGTCCGACTCAGT
TTTCTCCAACAGCTCCACTGACCTGTCCACCCAGCTCTCTGTTCCATATG
AGGACATTGTTCAGCTTGAGTGGCTTTCGAACTTTGTTGAGGATTCCTTC
TCTGGAGGAAGCCTTACTATGAGCAAACAAGAGTCATCCACGATCACTAA
GGATGATTCATCTCACAACCAGTTTCAGACCTCCAGCCCGGTCTCTGTTT
TAGAGAGCAGCAGCTCCTGCTCGGGGGAGAAAACCGTGTTGGGAAGCCCT
GAGACTACGGCCCCTGGGAGGCGCGGGCGTGCTCGTAGCAAGCGCCCTCG
CCCCGCAATGTTTAATCCCCGTCCTCCGGTTCAACTTGTGTCGCCAACTT
CCCCCGTCACTGAAACACCACCACCGCATCGCTTAATTGCC
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