FC925375

Overview
NameFC925375
Unique NameFC925375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length494
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3801 contig Ccv1_Contig3801:3..496. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925375 vs. ExPASy Swiss-Prot
Match: ACSL5_MOUSE (Long-chain-fatty-acid--CoA ligase 5 OS=Mus musculus GN=Acsl5 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.575e-23
Identity = 53/123 (43.09%), Postives = 80/123 (65.04%), Query Frame = 1
Query:   13 LKNIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMYKS 381
            ++N+Y+    +  V+V+G S  SFL+ +V P+ D+L  +AA+ GV G F+ LC+N   KE IL +L ++ KE  LK FE +K++ + P PF IE  LLTPT K KR +L K +Q  I ++Y+S
Sbjct:  558 IENVYSRSRPVLQVFVHGESLRSFLIGVVVPDPDSLPSFAAKIGVKGSFEELCKNQCVKEAILEDLQKIGKEGGLKSFEQVKSIFVHPEPFTIENGLLTPTLKAKRVELAKFFQTQIKSLYES 680          
BLAST of FC925375 vs. ExPASy Swiss-Prot
Match: ACSL5_HUMAN (Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapiens GN=ACSL5 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.509e-23
Identity = 53/122 (43.44%), Postives = 78/122 (63.93%), Query Frame = 1
Query:   13 LKNIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMYK 378
            ++NIY     +  ++V+G S  S LV +V P+ D L  +AA+ GV G F+ LC+N   +E IL +L ++ KE  LK FE +KA+ L P PF IE  LLTPT K KR +L K+++  ID++Y+
Sbjct:  558 IENIYNRSQPVLQIFVHGESLRSSLVGVVVPDTDVLPSFAAKLGVKGSFEELCQNQVVREAILEDLQKIGKESGLKTFEQVKAIFLHPEPFSIENGLLTPTLKAKRGELSKYFRTQIDSLYE 679          
BLAST of FC925375 vs. ExPASy Swiss-Prot
Match: ACSL5_RAT (Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norvegicus GN=Acsl5 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.583e-23
Identity = 53/123 (43.09%), Postives = 80/123 (65.04%), Query Frame = 1
Query:   13 LKNIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMYKS 381
            ++N+Y+    I  V+V+G S  SFL+ +V P+ ++L  +AA+ GV G F+ LC+N   K+ IL +L +V KE  LK FE +K++ + P PF IE  LLTPT K KR +L K +Q  I ++Y+S
Sbjct:  558 IENVYSRSRPILQVFVHGESLRSFLIGVVVPDPESLPSFAAKIGVKGSFEELCQNQCVKKAILEDLQKVGKEGGLKSFEQVKSIFVHPEPFSIENGLLTPTLKAKRVELAKFFQTQIKSLYES 680          
BLAST of FC925375 vs. ExPASy Swiss-Prot
Match: ACSL1_CAVPO (Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porcellus GN=ACSL1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.741e-22
Identity = 47/123 (38.21%), Postives = 76/123 (61.79%), Query Frame = 1
Query:   13 LKNIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMYKS 381
            ++NIY     +  V+V+G S ++FL+AIV P+ ++L  WA + G  G F+ LC N   K+ IL ++ R+ K+  LK FE ++ + L P  F ++  LLTPT K KRP+L  +++  ID +Y +
Sbjct:  573 IENIYVRSEPVAQVFVHGESLQAFLIAIVVPDAESLASWARKRGFEGSFEELCRNKDVKKAILEDMVRIGKDSGLKSFEQVRGIALHPELFSVDNGLLTPTMKAKRPELRNYFRSQIDELYST 695          
BLAST of FC925375 vs. ExPASy Swiss-Prot
Match: ACSL1_MOUSE (Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.067e-22
Identity = 48/121 (39.67%), Postives = 76/121 (62.81%), Query Frame = 1
Query:   13 LKNIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMY 375
            ++NIY    A+  V+V+G S ++FL+A+V P+ ++L  WA + G+ G F+ LC N    + IL +L ++ KE  LK FE +K + + P  F I+  LLTPT K KRP+L  +++  ID +Y
Sbjct:  574 IENIYLRSEAVAQVFVHGESLQAFLIAVVVPDVESLPSWAQKRGLQGSFEELCRNKDINKAILDDLLKLGKEAGLKPFEQVKGIAVHPELFSIDNGLLTPTLKAKRPELRNYFRSQIDELY 694          
BLAST of FC925375 vs. ExPASy Swiss-Prot
Match: ACSL1_HUMAN (Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapiens GN=ACSL1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.618e-22
Identity = 49/123 (39.84%), Postives = 76/123 (61.79%), Query Frame = 1
Query:   13 LKNIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMYKS 381
            ++NIY     +  V+V+G S ++FL+AIV P+ + L  WA + G  G F+ LC N   K+ IL ++ R+ K+  LK FE +K + L P  F I+  LLTPT K KRP+L  +++  ID++Y +
Sbjct:  573 IENIYMRSEPVAQVFVHGESLQAFLIAIVVPDVETLCSWAQKRGFEGSFEELCRNKDVKKAILEDMVRLGKDSGLKPFEQVKGITLHPELFSIDNGLLTPTMKAKRPELRNYFRSQIDDLYST 695          
BLAST of FC925375 vs. ExPASy Swiss-Prot
Match: ACSL6_HUMAN (Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapiens GN=ACSL6 PE=2 SV=4)

HSP 1 Score: 99.7525 bits (247), Expect = 7.317e-21
Identity = 44/121 (36.36%), Postives = 75/121 (61.98%), Query Frame = 1
Query:   13 LKNIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMY 375
            ++NIY     +  ++V+G+S ++FLV IV P+ + +  WA + G+ G +  LC N   K+ IL ++ R+ KE  L  FE +KA+H+    F ++  LLTPT K KRP+L ++++  I+ +Y
Sbjct:  573 IENIYIRSQPVAQIYVHGDSLKAFLVGIVVPDPEVMPSWAQKRGIEGTYADLCTNKDLKKAILEDMVRLGKESGLHSFEQVKAIHIHSDMFSVQNGLLTPTLKAKRPELREYFKKQIEELY 693          
BLAST of FC925375 vs. ExPASy Swiss-Prot
Match: ACSL1_RAT (Long-chain-fatty-acid--CoA ligase 1 OS=Rattus norvegicus GN=Acsl1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.317e-21
Identity = 47/123 (38.21%), Postives = 74/123 (60.16%), Query Frame = 1
Query:   13 LKNIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMYKS 381
            ++NIY    A+  V+V+G S ++FL+AIV P+ + L  WA + G  G F+ LC N    + IL ++ ++ K   LK FE +K + + P  F I+  LLTPT K KRP+L  +++  ID +Y +
Sbjct:  574 IENIYLRSEAVAQVFVHGESLQAFLIAIVVPDVEILPSWAQKRGFQGSFEELCRNKDINKAILEDMVKLGKNAGLKPFEQVKGIAVHPELFSIDNGLLTPTLKAKRPELRNYFRSQIDELYST 696          
BLAST of FC925375 vs. ExPASy Swiss-Prot
Match: ACSL6_RAT (Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norvegicus GN=Acsl6 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.802e-19
Identity = 41/121 (33.88%), Postives = 78/121 (64.46%), Query Frame = 1
Query:   13 LKNIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMY 375
            ++NIY     +  ++V+G+S ++FLV IV P+ + +  WA + G+ G+++ LC++ + K+ IL ++  + KE  L  FE +KA+++    F ++  LLTPT K KRP+L ++++  I+ +Y
Sbjct:  573 IENIYIRSEPVAQIYVHGDSLKAFLVGIVVPDPEVMPCWAQKKGIEGNYQELCKSKELKKAILDDMVMLGKESGLHSFEQVKAIYIHCDMFSVQNGLLTPTLKAKRPELREYFKKQIEELY 693          
BLAST of FC925375 vs. ExPASy Swiss-Prot
Match: ACSL6_MOUSE (Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculus GN=Acsl6 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.244e-19
Identity = 41/121 (33.88%), Postives = 75/121 (61.98%), Query Frame = 1
Query:   13 LKNIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMY 375
            ++NIY     +  ++V+G+S ++FLV IV P+ + +  WA + G+ G ++ LC   + K+ IL ++  + KE  L  FE +KA+++    F ++  LLTPT K KRP+L ++++  I+ +Y
Sbjct:  573 IENIYIRSEPVAQIYVHGDSLKAFLVGIVVPDPEVMPSWAQKKGIEGTYQELCMKKELKKAILDDMVMLGKESGLHSFEQVKAIYIHCDMFSVQNGLLTPTLKAKRPELREYFKKQIEELY 693          
The following BLAST results are available for this feature:
BLAST of FC925375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
ACSL5_MOUSE1.575e-2343.09Long-chain-fatty-acid--CoA ligase 5 OS=Mus musculu... [more]
ACSL5_HUMAN3.509e-2343.44Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapien... [more]
ACSL5_RAT4.583e-2343.09Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norv... [more]
ACSL1_CAVPO1.741e-2238.21Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porce... [more]
ACSL1_MOUSE5.067e-2239.67Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculu... [more]
ACSL1_HUMAN6.618e-2239.84Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapien... [more]
ACSL6_HUMAN7.317e-2136.36Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapien... [more]
ACSL1_RAT7.317e-2138.21Long-chain-fatty-acid--CoA ligase 1 OS=Rattus norv... [more]
ACSL6_RAT1.802e-1933.88Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norv... [more]
ACSL6_MOUSE5.244e-1933.88Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YI10FM1 TF Citrus clementina cDNA clone KN0AAP8YI10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925375 ID=FC925375; Name=FC925375; organism=Citrus clementina; type=EST; length=494bp
TGCTGTTGACCTTTGAAGAATATTTATGCTCTTGTATCTGCTATTGATTC
GGTATGGGTGTATGGGAACAGCTTTGAGTCCTTCCTTGTTGCCATTGTCA
ACCCCAACAAGGACGCACTTGAAAGATGGGCAGCTGAAAATGGTGTAAAT
GGAGACTTCAAGTCCCTCTGTGAAAATCCCAAGGCAAAAGAATTCATACT
CGGAGAGCTCTCAAGAGTTGCTAAAGAGAAAAAGTTGAAAGGTTTTGAAT
TCATTAAAGCTGTTCATCTTGAACCTGTCCCATTCGACATTGAACGTGAT
CTTCTTACTCCAACATATAAGAAGAAAAGGCCCCAATTGCTCAAACATTA
TCAGGATGTAATCGACAACATGTACAAGAGTGCAAACAGGCCTAGTTCTT
GAAAGAAAATAATTTTTGGAGTATGCTTCTGTGTGAAAAAGTTTCTTTTT
TCATTCAAGTCCTTGTGCTTCTTGTCAGACTGTACATATCGATA
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