FC925379

Overview
NameFC925379
Unique NameFC925379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length534
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1987 contig Ccv1_Contig1987:1..534. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925379 vs. ExPASy Swiss-Prot
Match: PDIA1_MOUSE (Protein disulfide-isomerase OS=Mus musculus GN=P4hb PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.305e-15
Identity = 34/78 (43.59%), Postives = 54/78 (69.23%), Query Frame = 1
Query:  301 DDKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 534
            ++ +V+VLK+ NF + +  +K+++VEFYAPWCGHC+           +LK+    + LAKVDATEE++LA +Y V+G+
Sbjct:   24 EEDNVLVLKKSNFEEALAAHKYLLVEFYAPWCGHCKALAPEYAKRAAKLKAEGSEIRLAKVDATEESDLAQQYGVRGY 101          
BLAST of FC925379 vs. ExPASy Swiss-Prot
Match: PDIA1_CRIGR (Protein disulfide-isomerase OS=Cricetulus griseus GN=P4HB PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.637e-15
Identity = 36/81 (44.44%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  292 PEIDDKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 534
            PE +D +V+VLK+ NF++ +  + +++VEFYAPWCGHC+           +LK+    + LAKVDATEE++LA +Y V+G+
Sbjct:   22 PEEED-NVLVLKKSNFAEALAAHNYLLVEFYAPWCGHCKALAPEYAKAAAKLKAEGSEIRLAKVDATEESDLAQQYGVRGY 101          
BLAST of FC925379 vs. ExPASy Swiss-Prot
Match: PDIA1_MACFU (Protein disulfide-isomerase OS=Macaca fuscata fuscata GN=P4HB PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.362e-15
Identity = 34/84 (40.48%), Postives = 56/84 (66.67%), Query Frame = 1
Query:  283 YKEPEIDDKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 534
            Y +   ++  V+VL++ NF++ +  +K+++VEFYAPWCGHC+           +LK+    + LAKVDATEE++LA +Y V+G+
Sbjct:   18 YADAPEEEDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGY 101          
BLAST of FC925379 vs. ExPASy Swiss-Prot
Match: PDI_RICCO (Protein disulfide-isomerase OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.615e-15
Identity = 40/84 (47.62%), Postives = 52/84 (61.90%), Query Frame = 1
Query:  289 EPEIDDKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEE--NELAHEYDVQGF 534
            E E +   V+ L   NF+D I  + F++VEFYAPWCGHC+          + LKS +  VVLAKVDA EE   ELA +YD++GF
Sbjct:   26 ESEEEQSSVLTLDSTNFTDTISKHDFIVVEFYAPWCGHCKKLRPEYEKAASILKSHDIPVVLAKVDANEEANKELATQYDIKGF 109          
BLAST of FC925379 vs. ExPASy Swiss-Prot
Match: PDIA1_RAT (Protein disulfide-isomerase OS=Rattus norvegicus GN=P4hb PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 9.615e-15
Identity = 33/78 (42.31%), Postives = 54/78 (69.23%), Query Frame = 1
Query:  301 DDKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 534
            ++ +V+VLK+ NF++ +  + +++VEFYAPWCGHC+           +LK+    + LAKVDATEE++LA +Y V+G+
Sbjct:   24 EEDNVLVLKKSNFAEALAAHNYLLVEFYAPWCGHCKALAPEYAKAAAKLKAEGSEIRLAKVDATEESDLAQQYGVRGY 101          
BLAST of FC925379 vs. ExPASy Swiss-Prot
Match: PDIA1_PONAB (Protein disulfide-isomerase OS=Pongo abelii GN=P4HB PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.615e-15
Identity = 36/81 (44.44%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  292 PEIDDKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 534
            PE +D  V+VL++ NF++ +  +K+++VEFYAPWCGHC+           +LK+    + LAKVDATEE++LA +Y V+G+
Sbjct:   20 PEEEDH-VLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGY 99          
BLAST of FC925379 vs. ExPASy Swiss-Prot
Match: PDIA1_HUMAN (Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 9.615e-15
Identity = 36/81 (44.44%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  292 PEIDDKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 534
            PE +D  V+VL++ NF++ +  +K+++VEFYAPWCGHC+           +LK+    + LAKVDATEE++LA +Y V+G+
Sbjct:   20 PEEEDH-VLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGY 99          
BLAST of FC925379 vs. ExPASy Swiss-Prot
Match: PDIA1_RABIT (Protein disulfide-isomerase OS=Oryctolagus cuniculus GN=P4HB PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.797e-14
Identity = 34/78 (43.59%), Postives = 53/78 (67.95%), Query Frame = 1
Query:  301 DDKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 534
            ++ +V+VLK  NF++ +  +K ++VEFYAPWCGHC+           +LK+    + LAKVDATEE++LA +Y V+G+
Sbjct:   23 EEDNVLVLKSSNFAEELAAHKHLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSDIRLAKVDATEESDLAQQYGVRGY 100          
BLAST of FC925379 vs. ExPASy Swiss-Prot
Match: PDI2_CAEEL (Protein disulfide-isomerase 2 OS=Caenorhabditis elegans GN=pdi-2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.797e-14
Identity = 31/78 (39.74%), Postives = 52/78 (66.67%), Query Frame = 1
Query:  301 DDKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 534
            ++++V+VL + NF +VI  N+F++VEFYAPWCGHC+          T+LK     + L K+DAT   E++ +++V+G+
Sbjct:   21 EEENVIVLTKDNFDEVINGNEFILVEFYAPWCGHCKSLAPEYAKAATQLKEEGSDIKLGKLDATVHGEVSSKFEVRGY 98          
BLAST of FC925379 vs. ExPASy Swiss-Prot
Match: PDIA1_BOVIN (Protein disulfide-isomerase OS=Bos taurus GN=P4HB PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.772e-14
Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 1
Query:  301 DDKD-VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 534
            D++D V+VL + NF + +  +K+++VEFYAPWCGHC+           +LK+    + LAKVDATEE++LA +Y V+G+
Sbjct:   23 DEEDHVLVLHKGNFDEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGY 101          
The following BLAST results are available for this feature:
BLAST of FC925379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
PDIA1_MOUSE3.305e-1543.59Protein disulfide-isomerase OS=Mus musculus GN=P4h... [more]
PDIA1_CRIGR5.637e-1544.44Protein disulfide-isomerase OS=Cricetulus griseus ... [more]
PDIA1_MACFU7.362e-1540.48Protein disulfide-isomerase OS=Macaca fuscata fusc... [more]
PDI_RICCO9.615e-1547.62Protein disulfide-isomerase OS=Ricinus communis PE... [more]
PDIA1_RAT9.615e-1542.31Protein disulfide-isomerase OS=Rattus norvegicus G... [more]
PDIA1_PONAB9.615e-1544.44Protein disulfide-isomerase OS=Pongo abelii GN=P4H... [more]
PDIA1_HUMAN9.615e-1544.44Protein disulfide-isomerase OS=Homo sapiens GN=P4H... [more]
PDIA1_RABIT2.797e-1443.59Protein disulfide-isomerase OS=Oryctolagus cunicul... [more]
PDI2_CAEEL2.797e-1439.74Protein disulfide-isomerase 2 OS=Caenorhabditis el... [more]
PDIA1_BOVIN4.772e-1444.30Protein disulfide-isomerase OS=Bos taurus GN=P4HB ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH01FM1 TF Citrus clementina cDNA clone KN0AAP3YH01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925379 ID=FC925379; Name=FC925379; organism=Citrus clementina; type=EST; length=534bp
CGAACTCAGCGTGTGAAAGGAAAGAAAAAAATGTCAACTCGCTACATTCT
CCTTCTCTCACTCACAATTCTCCTCTTATTCTCTCCCGCTCTCGCCAAAT
CTCAAAACGACGCCGCTTCAGACGACGACGAAGATCTCAGCTTCCTCGAA
GAAGCCGACGCCGATACCAAATCCAAAGCCGCATCGCACCACCAGTTCGG
CGAGAAGGATGGCGATCCAGACGACGATGACTTCTCCGACGACTTCGACG
ACGAAAACTACCACGATTTCGACGACTCCGAGTACAAGGAGCCGGAGATC
GATGACAAAGACGTCGTTGTTTTGAAGGAAAGGAATTTTAGTGATGTCAT
CGAGAACAACAAGTTCGTGATGGTTGAATTCTACGCGCCGTGGTGCGGAC
ACTGTCAGGCCTTGGCTCCGGAATACGCGGCGGCCGCTACGGAGCTGAAG
TCCGCCAACGAAAGTGTGGTTTTGGCTAAAGTTGACGCGACTGAAGAGAA
TGAGCTGGCGCACGAGTACGACGTTCAGGGCTTC
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