FC925388

Overview
NameFC925388
Unique NameFC925388
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3805 contig Ccv1_Contig3805:1..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925388 vs. ExPASy Swiss-Prot
Match: PPL1_ARATH (PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1 PE=1 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 7.441e-74
Identity = 130/190 (68.42%), Postives = 161/190 (84.74%), Query Frame = 3
Query:   57 GVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESKKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTG 626
            GV+P+  ++G+S +VKAEH S +SS++  DKC RR ++  GV+APW+SL+++ P SFAAESKKGFL+V+D KD Y+F+YPFGWQEV+IEGQDKV+KDVIEPLESVSVNL+PT KQ I++FGPP+++AETLIKK LAPP QKT +I ASE+DVDGK YY FEFT QA NY RHALG +TV NG FYTLTTG
Sbjct:   18 GVIPS-SKKGLSFLVKAEHHSSSSSSHLQDKCQRRLIVTFGVVAPWISLLSRAPLSFAAESKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAPPNQKTTLIDASEHDVDGKTYYQFEFTVQARNYTRHALGTITVFNGNFYTLTTG 206          
BLAST of FC925388 vs. ExPASy Swiss-Prot
Match: PPL2_ARATH (PsbP-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPL2 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.739e-22
Identity = 64/179 (35.75%), Postives = 87/179 (48.60%), Query Frame = 3
Query:  102 KAEHASMASSANSLDKCGRRQ-MIAVGVIAPWVSLVNQTPPS---FAAESKKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTG 626
            KA+ +       S +   RRQ ++ VG      +LV  + P+    A E  K +    D++DGYS+ YP  W+E      D  FKD    L++V V  IPT K DI + GP +EV   L+K   A P Q   I    E   DGK YY FE+  + P Y   +   V VGN ++YTL  G
Sbjct:   41 KADSSESTYQKGSGNNWKRRQALVGVG------TLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVKHKFAAPNQVATIYDMKERVEDGKNYYTFEYGLRTPIYATTSFATVAVGNNRYYTLIVG 213          
The following BLAST results are available for this feature:
BLAST of FC925388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PPL1_ARATH7.441e-7468.42PsbP-like protein 1, chloroplastic OS=Arabidopsis ... [more]
PPL2_ARATH1.739e-2235.75PsbP-like protein 2, chloroplastic OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YI17FM1 TF Citrus clementina cDNA clone KN0AAP8YI17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925388 ID=FC925388; Name=FC925388; organism=Citrus clementina; type=EST; length=629bp
TTCATCAAACGTCTTTTCTCAACTCTCTTCCTCAGCTGGGAGTACAAAAG
TACGGTGGTGTTTTGCCTGCAGTATGTAGAAGAGGCATTTCGCTTATTGT
AAAAGCTGAACATGCATCAATGGCTTCCTCTGCAAATTCTCTAGATAAAT
GTGGAAGACGCCAAATGATTGCTGTTGGAGTCATTGCCCCTTGGGTTTCT
CTTGTGAACCAAACTCCCCCCTCATTTGCTGCAGAAAGTAAAAAGGGATT
TCTGTCAGTCACAGACAAGAAGGACGGCTATTCATTTGTCTATCCATTCG
GATGGCAGGAAGTAATCATTGAAGGTCAAGATAAGGTATTCAAAGACGTC
ATTGAGCCATTAGAGAGTGTCAGTGTAAATCTAATCCCAACCGGTAAACA
GGATATTCGAGACTTTGGCCCTCCCCAAGAGGTTGCAGAGACTTTAATCA
AAAAGTTTTTGGCCCCTCCTACGCAGAAAACAAAGATAATTGCTGCTTCA
GAGAATGATGTTGATGGGAAAGCTTATTACGCATTTGAGTTCACTGCCCA
AGCGCCCAACTACATCCGTCATGCTCTTGGGGTAGTCACTGTTGGCAATG
GTAAGTTCTACACCTTGACAACCGGGGGC
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