FC925393

Overview
NameFC925393
Unique NameFC925393
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925393_ssr3 microsatellite FC925393_ssr3:3..14. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PHSH_VICFA (Alpha-glucan phosphorylase, H isozyme OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.447e-56
Identity = 107/143 (74.83%), Postives = 117/143 (81.82%), Query Frame = 2
Query:  305 EPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            +P  IASNISYH QY+PHFSP KF+ +QA++ATAESVRDRLIQQWNETY HF+KVD KQTYYLSMEFLQGR LTNAIG+L+IQ+AYADAL   G  LEEI EQEKD            SCFLDSMATLNLPAWGYGLRYRYGL
Sbjct:   29 KPDEIASNISYHAQYTPHFSPFKFQLQQAYYATAESVRDRLIQQWNETYLHFHKVDPKQTYYLSMEFLQGRALTNAIGNLNIQDAYADALRKFGLELEEITEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGL 171          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PHSH_SOLTU (Alpha-glucan phosphorylase, H isozyme OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.028e-55
Identity = 103/144 (71.53%), Postives = 118/144 (81.94%), Query Frame = 2
Query:  305 EPSAIASNISYHVQYSPHFSPTKFEPEQAFFA-TAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            +P+ IASNI YH QY+PHFSP KFEP QA++A TA+SVRDRLI+QWN+TY H++KV+ KQTYYLSME+LQGR LTNA+G+LDI NAYADALN LG  LEE+ EQEKD            SCFLDSMATLNLPAWGYGLRYRYGL
Sbjct:   22 DPTDIASNIKYHAQYTPHFSPFKFEPLQAYYAATADSVRDRLIKQWNDTYLHYDKVNPKQTYYLSMEYLQGRALTNAVGNLDIHNAYADALNKLGQQLEEVVEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGL 165          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PHSH_ARATH (Alpha-glucan phosphorylase, H isozyme OS=Arabidopsis thaliana GN=At3g46970 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.028e-55
Identity = 108/167 (64.67%), Postives = 119/167 (71.26%), Query Frame = 2
Query:  233 AKANGKNEXXXXXXXXXXXXXXXXEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            A ANGK                  + + IA NI YH +YSPHFSP KF PEQA +ATAES+RDRLIQ WNETY HFNKVD KQTYYLSME+LQGR LTNAIG+L++Q  YADAL  LG+ LEEIAEQEKD            SCFLDSMATLNLPAWGYGLRYR+GL
Sbjct:    2 ANANGKAATSLPEKISAKANPEADDATEIAGNIVYHAKYSPHFSPLKFGPEQALYATAESLRDRLIQLWNETYVHFNKVDPKQTYYLSMEYLQGRALTNAIGNLNLQGPYADALRTLGYELEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRHGL 168          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PHSH_WHEAT (Alpha-glucan phosphorylase, H isozyme OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.532e-53
Identity = 100/143 (69.93%), Postives = 112/143 (78.32%), Query Frame = 2
Query:  305 EPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            +PSAIA NISYH QYSPHFSP  F PEQAF+ATAESVRD L+Q+WN+TY HF+K D KQTYYLSME+LQGR LTNA+G+L I  AYADAL   G+ LE IA QE+D            SCFLDSMATLNLP+WGYGLRYRYGL
Sbjct:   17 DPSAIAGNISYHAQYSPHFSPLAFGPEQAFYATAESVRDHLLQRWNDTYLHFHKTDPKQTYYLSMEYLQGRALTNAVGNLAITGAYADALKKFGYELEAIAGQERDAALGNGGLGRLASCFLDSMATLNLPSWGYGLRYRYGL 159          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PHSL_IPOBA (Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.806e-44
Identity = 83/143 (58.04%), Postives = 106/143 (74.13%), Query Frame = 2
Query:  305 EPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            + ++IAS+I YH ++SP FSP +FE  +A+FATA+SVRD LI  WN TY ++ K+++KQ YYLSMEFLQGR L NAIG+L++   YA+ALN LGH LE +A +E D            SCFLDS+ATLN PAWGYGLRY+YGL
Sbjct:   68 DAASIASSIKYHAEFSPAFSPERFELPKAYFATAQSVRDALIVNWNATYDYYEKLNMKQAYYLSMEFLQGRALLNAIGNLELTGEYAEALNKLGHNLENVASKEPDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGL 210          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PHSL1_SOLTU (Alpha-1,4 glucan phosphorylase L-1 isozyme, chloroplastic/amyloplastic OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 2.376e-43
Identity = 82/143 (57.34%), Postives = 105/143 (73.43%), Query Frame = 2
Query:  305 EPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            + ++I S+I YH +++P FSP +FE  +AFFATA+SVRD L+  WN TY  + K+++KQ YYLSMEFLQGR L NAIG+L++  A+A+AL NLGH LE +A QE D            SCFLDS+ATLN PAWGYGLRY+YGL
Sbjct:   75 DAASITSSIKYHAEFTPVFSPERFELPKAFFATAQSVRDSLLINWNATYDIYEKLNMKQAYYLSMEFLQGRALLNAIGNLELTGAFAEALKNLGHNLENVASQEPDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGL 217          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PHSL2_SOLTU (Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic OS=Solanum tuberosum GN=STP-1 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.293e-43
Identity = 82/143 (57.34%), Postives = 103/143 (72.03%), Query Frame = 2
Query:  305 EPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            + +++ S+I YH +++P FSP KFE  +A++ATAESVRD LI  WN TY  + K+++KQ YYLSMEFLQGR L NAIG+L +   YADAL  LG+ LE++A QE D            SCFLDSMATLN PAWGYGLRY+YGL
Sbjct:   78 DSTSVLSSIKYHAEFTPSFSPEKFELPKAYYATAESVRDTLIINWNATYEFYEKMNVKQAYYLSMEFLQGRALLNAIGNLGLTGPYADALTKLGYSLEDVARQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYQYGL 220          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PHSL_VICFA (Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic OS=Vicia faba GN=PHO1 PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.011e-42
Identity = 81/143 (56.64%), Postives = 104/143 (72.73%), Query Frame = 2
Query:  305 EPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            + ++I S+I YH +++P FSP KFE  QAF ATA+SVRD LI  WN TY ++ K+++KQ YYLSMEFLQGR L NAIG+L++   YA+AL+ L + LE++A QE D            SCFLDS+ATLN PAWGYGLRY+YGL
Sbjct:   93 DTTSIVSSIKYHAEFTPLFSPEKFELPQAFIATAQSVRDALIINWNATYDYYEKLNVKQAYYLSMEFLQGRALLNAIGNLELTGPYAEALSQLSYKLEDVAHQEPDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGL 235          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PHS1_DICDI (Glycogen phosphorylase 1 OS=Dictyostelium discoideum GN=glpV PE=1 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 6.711e-30
Identity = 63/143 (44.06%), Postives = 94/143 (65.73%), Query Frame = 2
Query:  305 EPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            +  +I  +I  HV+Y+   +   F+   A+  +A SVRDRLI++WNET  ++ + D K+ YYLSMEFL GR+L NAI ++++++ Y +AL  LG  +E++ E+EKD            +CF+DS+ATL  PAWGYGLRY YG+
Sbjct:   40 DEDSIQKDILDHVEYTLARTKYNFDSFSAYQGSAYSVRDRLIERWNETQQYYTERDPKRVYYLSMEFLMGRSLQNAIYNMNLKDEYHNALLELGFEMEDLYEEEKDAALGNGGLGRLAACFMDSLATLKYPAWGYGLRYNYGM 182          
BLAST of FC925393 vs. ExPASy Swiss-Prot
Match: PYGB_HUMAN (Glycogen phosphorylase, brain form OS=Homo sapiens GN=PYGB PE=1 SV=5)

HSP 1 Score: 110.538 bits (275), Expect = 9.386e-24
Identity = 55/118 (46.61%), Postives = 74/118 (62.71%), Query Frame = 2
Query:  380 PEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGL 733
            P   FFA A +VRD L+ +W  T  H+ + D K+ YYLS+EF  GRTL N + +L +QNA  +A+  LG  LEE+ E E+D            +CFLDSMATL L A+GYG+RY +G+
Sbjct:   49 PRDYFFALAHTVRDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQLGLDLEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGI 166          
The following BLAST results are available for this feature:
BLAST of FC925393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
PHSH_VICFA2.447e-5674.83Alpha-glucan phosphorylase, H isozyme OS=Vicia fab... [more]
PHSH_SOLTU6.028e-5571.53Alpha-glucan phosphorylase, H isozyme OS=Solanum t... [more]
PHSH_ARATH6.028e-5564.67Alpha-glucan phosphorylase, H isozyme OS=Arabidops... [more]
PHSH_WHEAT2.532e-5369.93Alpha-glucan phosphorylase, H isozyme OS=Triticum ... [more]
PHSL_IPOBA2.806e-4458.04Alpha-1,4 glucan phosphorylase L isozyme, chloropl... [more]
PHSL1_SOLTU2.376e-4357.34Alpha-1,4 glucan phosphorylase L-1 isozyme, chloro... [more]
PHSL2_SOLTU5.293e-4357.34Alpha-1,4 glucan phosphorylase L-2 isozyme, chloro... [more]
PHSL_VICFA2.011e-4256.64Alpha-1,4 glucan phosphorylase L isozyme, chloropl... [more]
PHS1_DICDI6.711e-3044.06Glycogen phosphorylase 1 OS=Dictyostelium discoide... [more]
PYGB_HUMAN9.386e-2446.61Glycogen phosphorylase, brain form OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YD19FM1 TF Citrus clementina cDNA clone KN0AAP11YD19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925393 ID=FC925393; Name=FC925393; organism=Citrus clementina; type=EST; length=734bp
TTACTCACTCACTCTCATGATATCGTGATCGTCAGTCTCTGATATTTTTT
TTTCCCCCTTTAGAAACTCAATCACTTCAAAGTTCTTGTTCGTTTTCCTC
TTCTTAGCATATTTTTTCTTTCTCGCTCCAATACTTTCTTCATAACAATA
TCTTCTCTCACACTTCATTTACATTTTAAACTGCTCTGTCGCTTCTGAAA
CAAGCAATAATTTGTGGAATCAAATGGCGGATGCGAAAGCAAACGGAAAG
AATGAGGCGGCCAAACTGGCGAAAATTCCTGCGGCTGCGAATCCATTGGC
TAATGAACCATCGGCGATTGCATCAAATATAAGTTACCACGTGCAGTACA
GTCCTCATTTCTCGCCGACTAAGTTCGAGCCGGAGCAAGCTTTCTTTGCC
ACGGCGGAGAGTGTCCGCGATCGTCTTATTCAACAATGGAATGAGACATA
CCACCATTTTAATAAAGTTGATCTGAAGCAAACATACTACCTATCAATGG
AATTTCTTCAAGGAAGGACTTTGACTAATGCAATTGGCAGTTTGGACATT
CAGAATGCATATGCTGATGCTTTAAATAATTTGGGGCATGTCCTTGAGGA
GATAGCTGAACAGGAAAAAGATGCTGCACTAGGAAATGGTGGGCTGGGCA
GGCTAGCTTCATGCTTCTTAGACTCCATGGCAACATTGAATTTGCCTGCC
TGGGGTTATGGTTTGAGATACCGGTATGGGCTGT
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