FC925404

Overview
NameFC925404
Unique NameFC925404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5613 contig Ccv1_Contig5613:557..1209. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925404 vs. ExPASy Swiss-Prot
Match: NAC72_ARATH (NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.799e-18
Identity = 61/166 (36.75%), Postives = 81/166 (48.80%), Query Frame = 2
Query:    2 QLDDWVLCRIYKKHSGSQKP-VSATSVXXXXXXXXXXXXXXXXHLDDVLESLPEIDDRFFALPRMNSLKTLQQEDNKVNNLQHLGSGNFDWASLAGLHSVPEFVSAAXXXXXXXSHGVACYANNDFYVPSMPQMCHVNSGRVGNSVEEEVQSGLRNQRVDNSGLFQ 496
            +LDDWVLCRIYKK SGSQ+  V+                     LDDVL+S PEI D+ F LPRMNSL+T+              +GNFDWASLAGL+ +PE            ++G+  Y   D +                 + E E +SG  N++ ++SGL Q
Sbjct:  150 KLDDWVLCRIYKKTSGSQRQAVTPVQACREEHSTNGSSSSSSSQLDDVLDSFPEIKDQSFNLPRMNSLRTIL-------------NGNFDWASLAGLNPIPELA---------PTNGLPSYGGYDAF----------------RAAEGEAESGHVNRQQNSSGLTQ 277          
The following BLAST results are available for this feature:
BLAST of FC925404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NAC72_ARATH4.799e-1836.75NAC domain-containing protein 72 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP3YH13FM1 TF Citrus clementina cDNA clone KN0AAP3YH13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925404 ID=FC925404; Name=FC925404; organism=Citrus clementina; type=EST; length=653bp
GCAGTTAGATGATTGGGTTCTGTGCAGAATCTATAAGAAGCATTCAGGTT
CCCAAAAACCAGTGTCAGCAACAAGTGTTTCTTCAAGCAAAGAACACAGT
AATGGTTCTTGTTCATCTTCATCTTCTCATCTTGATGATGTGCTCGAGTC
TTTACCTGAAATTGATGACCGATTTTTCGCTTTGCCGCGCATGAACTCAC
TCAAGACTTTACAGCAAGAAGACAACAAGGTTAACAATTTGCAGCATCTG
GGGTCGGGTAATTTTGACTGGGCGAGTCTTGCGGGTCTTCATTCGGTCCC
CGAATTCGTCTCCGCTGCACAGACACAGACGACGACTCAGAGTCATGGGG
TGGCCTGTTATGCGAACAATGACTTTTATGTCCCCTCGATGCCCCAAATG
TGCCACGTAAATTCCGGAAGGGTGGGCAACTCGGTGGAAGAGGAGGTTCA
GAGTGGGCTTAGGAATCAACGGGTTGATAACTCGGGGCTCTTTCAGCATA
ATTCGGCCGTATTGACCCAACCGAACTTCTGTAGCCCGGTTGACCCGTAT
GGATTAAGGCACCCGACCCAATCAAGCGGGTTTGGGTTTAGACATTGAAA
TATGGGAAAAATGTCCGCGCATTTGAAATGGATGCATGATATTATGAAGA
AAA
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