FC925407

Overview
NameFC925407
Unique NameFC925407
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length413
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1990 contig Ccv1_Contig1990:1..413. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC925407 vs. ExPASy Swiss-Prot
Match: UPP_TOBAC (Uracil phosphoribosyltransferase OS=Nicotiana tabacum GN=UPP PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.105e-17
Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = 3 
Query:  279 MATEEKSISGDRMLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMA 413
            MA + K++SG+RMLVFVPPHPLIKHWVS+LRNEQTPCPIFRNAM+
Sbjct:    1 MAAQNKAMSGNRMLVFVPPHPLIKHWVSVLRNEQTPCPIFRNAMS 45
The following BLAST results are available for this feature:
BLAST of FC925407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UPP_TOBAC4.105e-1782.22Uracil phosphoribosyltransferase OS=Nicotiana taba... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP3YH15FM1 TF Citrus clementina cDNA clone KN0AAP3YH15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925407 ID=FC925407; Name=FC925407; organism=Citrus clementina; type=EST; length=413bp
CACACGGAAATCCTATTTCGCAAACTCCCTCACACTCGCAAACTCTCCCG
GAATCCGATACCATCGGATGCATGGCGTGCAACATTATTATTAGTATCCG
GTGTTCCACCGATACGCCGCGTTTTGCTGCCACTTGTCAGCTCCAGCTCG
ATTCCCGAAACCCTCGCTCCCCTCTTCTACTAAAACTCCTTCCTTCTCGG
GCTCTCACTCAGCGTCCCAATAAGATAGCGTATTCCTCCGACACTCCGCG
GCGCAGCTACGTTACCGTGAGGTCTCATATGGCCACTGAAGAGAAGTCGA
TTTCCGGGGACCGAATGCTTGTGTTTGTGCCACCTCATCCATTGATTAAG
CACTGGGTTTCAATTTTGAGAAACGAACAAACTCCTTGTCCTATTTTCAG
GAATGCAATGGCT
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