FC925452

Overview
NameFC925452
Unique NameFC925452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9547 contig Ccv1_Contig9547:1..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925452 vs. ExPASy Swiss-Prot
Match: RER1A_ARATH (Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 6.091e-69
Identity = 123/174 (70.69%), Postives = 137/174 (78.74%), Query Frame = 2
Query:   86 MEGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVIVAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEIE-VADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRPIAHMIKYRYIPFN 604
            M+  GGD+ S A+PV Q  H+AWR+YQ+YLDKTTPHA YRWIGTLV+  IYCLRV+Y+Q                      PLVDPE   V+DGP LPT+GSDEFKPFIRRLPEFKFWYSMTKAFCIAF+MTFFSVFDVPVFWPILLCYWIVLFVLTMRR IAHMIKY+YIPF+
Sbjct:    1 MDESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFS 174          
BLAST of FC925452 vs. ExPASy Swiss-Prot
Match: RER1B_ARATH (Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2)

HSP 1 Score: 258.07 bits (658), Expect = 3.948e-68
Identity = 120/174 (68.97%), Postives = 136/174 (78.16%), Query Frame = 2
Query:   86 MEGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVIVAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRPIAHMIKYRYIPFNI 607
            MEG GGD+ S A+PV +  H+AWR+YQYYLDKTTPH+  RWIGTLV   IYCLRV+ +                       PLVDPE+EV+DG  LPT+GSDEFKPFIRRLPEFKFWYSMTKAFCIAF+MTFFSVFDVPVFWPILLCYW+VLFVLTMRR IAHMIK++YIPF+I
Sbjct:    1 MEGSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFYIISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSI 174          
BLAST of FC925452 vs. ExPASy Swiss-Prot
Match: RER1C_ARATH (Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.331e-44
Identity = 84/167 (50.30%), Postives = 109/167 (65.27%), Query Frame = 2
Query:  104 DTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVIVAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRPIAHMIKYRYIPFN 604
            D++S A  V++  H   +  Q+ LDKT PH +YRWI  L +V IY +RV++V+                      P  DPE  +  G  LPT+ SDE++PF+RRLPEFKFW S+ +AF I F+MTFF VFDVPVFWPILL YW++LF LTMR+ I HMIKYRY+PF+
Sbjct:   29 DSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFIIGFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFS 195          
BLAST of FC925452 vs. ExPASy Swiss-Prot
Match: RER1_BOVIN (Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 1.120e-38
Identity = 79/173 (45.66%), Postives = 106/173 (61.27%), Query Frame = 2
Query:   89 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVIVAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRPIAHMIKYRYIPF 601
            + +G       S V ++     ++YQ +LDK+TPH   RW+ TL +  IY +RV+ +Q                      P VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++ TK   +A V TFF  F+VPVFWPIL+ Y+I+LF +TM+R I HMIKYRYIPF
Sbjct:    5 DSVGDSVHGKPSVVYRFFTRLGQIYQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of FC925452 vs. ExPASy Swiss-Prot
Match: RER1_RAT (Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.262e-38
Identity = 76/173 (43.93%), Postives = 106/173 (61.27%), Query Frame = 2
Query:   89 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVIVAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRPIAHMIKYRYIPF 601
            + +G       S V ++     ++YQ +LDK+TP+   RW+ TL +  +Y +RV+ +Q                      P VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++ TK   +A + TFF  F+VPVFWPIL+ Y+I+LF +TM+R I HMIKYRYIPF
Sbjct:    5 DSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of FC925452 vs. ExPASy Swiss-Prot
Match: RER1_MOUSE (Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.262e-38
Identity = 76/173 (43.93%), Postives = 106/173 (61.27%), Query Frame = 2
Query:   89 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVIVAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRPIAHMIKYRYIPF 601
            + +G       S V ++     ++YQ +LDK+TP+   RW+ TL +  +Y +RV+ +Q                      P VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++ TK   +A + TFF  F+VPVFWPIL+ Y+I+LF +TM+R I HMIKYRYIPF
Sbjct:    5 DSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of FC925452 vs. ExPASy Swiss-Prot
Match: RER1_PONAB (Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.484e-38
Identity = 77/173 (44.51%), Postives = 106/173 (61.27%), Query Frame = 2
Query:   89 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVIVAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRPIAHMIKYRYIPF 601
            + +G       S V ++     ++YQ +LDK+TP+   RW+ TL +  +Y +RV+ +Q                      P VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++ TK   +A V TFF  F+VPVFWPIL+ Y+I+LF +TM+R I HMIKYRYIPF
Sbjct:    5 DSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of FC925452 vs. ExPASy Swiss-Prot
Match: RER1_HUMAN (Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.484e-38
Identity = 77/173 (44.51%), Postives = 106/173 (61.27%), Query Frame = 2
Query:   89 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVIVAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRPIAHMIKYRYIPF 601
            + +G       S V ++     ++YQ +LDK+TP+   RW+ TL +  +Y +RV+ +Q                      P VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++ TK   +A V TFF  F+VPVFWPIL+ Y+I+LF +TM+R I HMIKYRYIPF
Sbjct:    5 DSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of FC925452 vs. ExPASy Swiss-Prot
Match: RER1_CHICK (Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.239e-37
Identity = 79/173 (45.66%), Postives = 105/173 (60.69%), Query Frame = 2
Query:   89 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVIVAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRPIAHMIKYRYIPF 601
            + IG       S V ++     ++YQ +LDK+TP+   RWI TL +  IY +RV+ +Q                      P VDP +  +  DGP LPT+ ++EF+PFIRRLPEFKFW+S TK   +A   TFF  F+VPVFWPIL+ Y+I+LF +TM+R I HMIKYRYIPF
Sbjct:    5 DSIGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKFWHSATKGILVAMACTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of FC925452 vs. ExPASy Swiss-Prot
Match: RER1_CAEEL (Protein RER1 homolog OS=Caenorhabditis elegans GN=rer-1 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.239e-37
Identity = 74/162 (45.68%), Postives = 98/162 (60.49%), Query Frame = 2
Query:  131 SQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVIVAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEIEVAD---GPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRPIAHMIKYRYIPFNI 607
            S++ H     YQYYLD+ TPH  +RW+  L+ +  +  R+  +Q                      P +DP +E  D   GP+LP+K +DEF+PF+RRLPEFKFW+S  KA  IA   TFF  FDVPVFWPIL+ Y+ +L  LT++R I HMIKYRYIPF +
Sbjct:   13 SRFFHSLEVKYQYYLDRLTPHTAFRWVIALISLVFFASRIILLQGFYIVAYAVGIYYLNLFLLFLTPSIDPALEFEDEDDGPVLPSKTNDEFRPFMRRLPEFKFWHSFMKATLIAITCTFFEFFDVPVFWPILVMYFFILTFLTLKRQIMHMIKYRYIPFTV 174          
The following BLAST results are available for this feature:
BLAST of FC925452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RER1A_ARATH6.091e-6970.69Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=... [more]
RER1B_ARATH3.948e-6868.97Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=... [more]
RER1C_ARATH2.331e-4450.30Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=... [more]
RER1_BOVIN1.120e-3845.66Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2[more]
RER1_RAT7.262e-3843.93Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=... [more]
RER1_MOUSE7.262e-3843.93Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1[more]
RER1_PONAB9.484e-3844.51Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1[more]
RER1_HUMAN9.484e-3844.51Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1[more]
RER1_CHICK1.239e-3745.66Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1[more]
RER1_CAEEL1.239e-3745.68Protein RER1 homolog OS=Caenorhabditis elegans GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YJ20FM1 TF Citrus clementina cDNA clone KN0AAP8YJ20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925452 ID=FC925452; Name=FC925452; organism=Citrus clementina; type=EST; length=767bp
TCAATTCGCTTCCCTCAAATCAATTTGAGTCCTTTTACGTGAACATCGAA
AGACTCGTTTCAAGGACTTTTCATACTTCGATTGAATGGAAGGAATTGGA
GGCGACACTGCCTCGGCGGCATCCCCTGTATCACAATGGGGACATGATGC
TTGGAGGCTATATCAGTATTACCTGGACAAGACTACTCCACATGCAGTTT
ATAGGTGGATTGGAACCCTTGTAATTGTGGCAATCTACTGTTTGCGGGTT
TTTTATGTGCAAGGATTCTACATCATATCCTATGGTCTTGGGATCTATCT
CCTGAATTTGCTTATTGGGTTTTTGTCGCCTCTGGTTGATCCTGAAATCG
AAGTCGCTGATGGGCCTTTGTTGCCGACAAAGGGTTCTGATGAATTCAAG
CCTTTTATTCGCCGACTCCCAGAGTTTAAATTTTGGTACTCCATGACCAA
GGCTTTCTGCATAGCTTTTGTAATGACATTCTTTTCTGTGTTTGATGTTC
CTGTGTTTTGGCCTATATTACTTTGTTACTGGATTGTTCTGTTTGTTCTT
ACAATGAGACGCCCAATCGCACACATGATCAAATACAGATATATCCCGTT
CAACATTGGAAAACAGAAGTATGGTGGTAAGAAACCTTCATCAAGTGGGG
GTGGCTCCCGTGGGGACTGAAGCAGAACTTAATTCACGAGCCAGTAGAAA
AAGGACGGGATGGGGATAAAAAAAAAGGTTATGGGAAGATATTAAAATTG
AATTTTTTCCTTTCAGG
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