FC925452
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC925452 vs. ExPASy Swiss-Prot
Match: RER1A_ARATH (Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1) HSP 1 Score: 260.766 bits (665), Expect = 6.091e-69 Identity = 123/174 (70.69%), Postives = 137/174 (78.74%), Query Frame = 2 Query: 86 MEGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVIVAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEIE-VADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRPIAHMIKYRYIPFN 604 M+ GGD+ S A+PV Q H+AWR+YQ+YLDKTTPHA YRWIGTLV+ IYCLRV+Y+Q PLVDPE V+DGP LPT+GSDEFKPFIRRLPEFKFWYSMTKAFCIAF+MTFFSVFDVPVFWPILLCYWIVLFVLTMRR IAHMIKY+YIPF+ Sbjct: 1 MDESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFS 174
BLAST of FC925452 vs. ExPASy Swiss-Prot
Match: RER1B_ARATH (Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2) HSP 1 Score: 258.07 bits (658), Expect = 3.948e-68 Identity = 120/174 (68.97%), Postives = 136/174 (78.16%), Query Frame = 2 Query: 86 MEGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVIVAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRPIAHMIKYRYIPFNI 607 MEG GGD+ S A+PV + H+AWR+YQYYLDKTTPH+ RWIGTLV IYCLRV+ + PLVDPE+EV+DG LPT+GSDEFKPFIRRLPEFKFWYSMTKAFCIAF+MTFFSVFDVPVFWPILLCYW+VLFVLTMRR IAHMIK++YIPF+I Sbjct: 1 MEGSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFYIISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSI 174
BLAST of FC925452 vs. ExPASy Swiss-Prot
Match: RER1C_ARATH (Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 2.331e-44 Identity = 84/167 (50.30%), Postives = 109/167 (65.27%), Query Frame = 2 Query: 104 DTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVIVAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRPIAHMIKYRYIPFN 604 D++S A V++ H + Q+ LDKT PH +YRWI L +V IY +RV++V+ P DPE + G LPT+ SDE++PF+RRLPEFKFW S+ +AF I F+MTFF VFDVPVFWPILL YW++LF LTMR+ I HMIKYRY+PF+ Sbjct: 29 DSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFIIGFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFS 195
BLAST of FC925452 vs. ExPASy Swiss-Prot
Match: RER1_BOVIN (Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2) HSP 1 Score: 160.229 bits (404), Expect = 1.120e-38 Identity = 79/173 (45.66%), Postives = 106/173 (61.27%), Query Frame = 2 Query: 89 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVIVAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRPIAHMIKYRYIPF 601 + +G S V ++ ++YQ +LDK+TPH RW+ TL + IY +RV+ +Q P VDP + + DGP LPTK ++EF+PFIRRLPEFKFW++ TK +A V TFF F+VPVFWPIL+ Y+I+LF +TM+R I HMIKYRYIPF Sbjct: 5 DSVGDSVHGKPSVVYRFFTRLGQIYQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177
BLAST of FC925452 vs. ExPASy Swiss-Prot
Match: RER1_RAT (Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 7.262e-38 Identity = 76/173 (43.93%), Postives = 106/173 (61.27%), Query Frame = 2 Query: 89 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVIVAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRPIAHMIKYRYIPF 601 + +G S V ++ ++YQ +LDK+TP+ RW+ TL + +Y +RV+ +Q P VDP + + DGP LPTK ++EF+PFIRRLPEFKFW++ TK +A + TFF F+VPVFWPIL+ Y+I+LF +TM+R I HMIKYRYIPF Sbjct: 5 DSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177
BLAST of FC925452 vs. ExPASy Swiss-Prot
Match: RER1_MOUSE (Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 7.262e-38 Identity = 76/173 (43.93%), Postives = 106/173 (61.27%), Query Frame = 2 Query: 89 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVIVAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRPIAHMIKYRYIPF 601 + +G S V ++ ++YQ +LDK+TP+ RW+ TL + +Y +RV+ +Q P VDP + + DGP LPTK ++EF+PFIRRLPEFKFW++ TK +A + TFF F+VPVFWPIL+ Y+I+LF +TM+R I HMIKYRYIPF Sbjct: 5 DSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177
BLAST of FC925452 vs. ExPASy Swiss-Prot
Match: RER1_PONAB (Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 9.484e-38 Identity = 77/173 (44.51%), Postives = 106/173 (61.27%), Query Frame = 2 Query: 89 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVIVAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRPIAHMIKYRYIPF 601 + +G S V ++ ++YQ +LDK+TP+ RW+ TL + +Y +RV+ +Q P VDP + + DGP LPTK ++EF+PFIRRLPEFKFW++ TK +A V TFF F+VPVFWPIL+ Y+I+LF +TM+R I HMIKYRYIPF Sbjct: 5 DSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177
BLAST of FC925452 vs. ExPASy Swiss-Prot
Match: RER1_HUMAN (Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 9.484e-38 Identity = 77/173 (44.51%), Postives = 106/173 (61.27%), Query Frame = 2 Query: 89 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVIVAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRPIAHMIKYRYIPF 601 + +G S V ++ ++YQ +LDK+TP+ RW+ TL + +Y +RV+ +Q P VDP + + DGP LPTK ++EF+PFIRRLPEFKFW++ TK +A V TFF F+VPVFWPIL+ Y+I+LF +TM+R I HMIKYRYIPF Sbjct: 5 DSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177
BLAST of FC925452 vs. ExPASy Swiss-Prot
Match: RER1_CHICK (Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.239e-37 Identity = 79/173 (45.66%), Postives = 105/173 (60.69%), Query Frame = 2 Query: 89 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVIVAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRPIAHMIKYRYIPF 601 + IG S V ++ ++YQ +LDK+TP+ RWI TL + IY +RV+ +Q P VDP + + DGP LPT+ ++EF+PFIRRLPEFKFW+S TK +A TFF F+VPVFWPIL+ Y+I+LF +TM+R I HMIKYRYIPF Sbjct: 5 DSIGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKFWHSATKGILVAMACTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177
BLAST of FC925452 vs. ExPASy Swiss-Prot
Match: RER1_CAEEL (Protein RER1 homolog OS=Caenorhabditis elegans GN=rer-1 PE=2 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.239e-37 Identity = 74/162 (45.68%), Postives = 98/162 (60.49%), Query Frame = 2 Query: 131 SQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVIVAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEIEVAD---GPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRPIAHMIKYRYIPFNI 607 S++ H YQYYLD+ TPH +RW+ L+ + + R+ +Q P +DP +E D GP+LP+K +DEF+PF+RRLPEFKFW+S KA IA TFF FDVPVFWPIL+ Y+ +L LT++R I HMIKYRYIPF + Sbjct: 13 SRFFHSLEVKYQYYLDRLTPHTAFRWVIALISLVFFASRIILLQGFYIVAYAVGIYYLNLFLLFLTPSIDPALEFEDEDDGPVLPSKTNDEFRPFMRRLPEFKFWHSFMKATLIAITCTFFEFFDVPVFWPILVMYFFILTFLTLKRQIMHMIKYRYIPFTV 174 The following BLAST results are available for this feature:
BLAST of FC925452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925452 ID=FC925452; Name=FC925452; organism=Citrus clementina; type=EST; length=767bpback to top |