FC925477

Overview
NameFC925477
Unique NameFC925477
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15228 contig Ccv1_Contig15228:166..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC925477 vs. ExPASy Swiss-Prot
Match: SKI16_ARATH (F-box protein SKIP16 OS=Arabidopsis thaliana GN=SKIP16 PE=1 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 6.288e-74
Identity = 140/244 (57.38%), Postives = 173/244 (70.90%), Query Frame = 1 
Query:   25 GLESVGDLALNVILSGLGPKDTAKVACLSKRFKAAASEECLWSKFCXXXXXXXXXXXXXGNPAPSFKAAYQIWREAFGMYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGGYSFCGHLVNVYLIPLSHIIMETKE-IRRHLDFPSRDKYVVVASSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNAL 753
            GLE  GDL L+++LS +GP++TA+VAC+SKR K +ASEE LWS FC             G+PAPSFK AYQ+WRE+F MYPW LVKRV+ CWD LK WL  NFPEAKATLRKG +E D+Q+ E SLKVKLP+PTR+LYRF DGQE  + +    GS+GLIGGYS   H VNVYL+PL  ++ ETKE   R L F SR   +V+A+S   S K F L+CT GQL+ GT N     +++PCVP+AL
Sbjct:    2 GLEDAGDLVLHIVLSKIGPENTARVACVSKRLKVSASEESLWSIFCSNDLNISTPLDPHGDPAPSFKRAYQLWRESFRMYPWNLVKRVRLCWDNLKQWLTLNFPEAKATLRKGVTEDDLQEFETSLKVKLPLPTRLLYRFVDGQELSSPNGLD-GSLGLIGGYSAYSHDVNVYLLPLKEVMRETKESFMRDLGFSSRLDLIVMAASVVASLKIFLLDCTTGQLFTGTSN----RQLLPCVPDAL 240
The following BLAST results are available for this feature:
BLAST of FC925477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKI16_ARATH6.288e-7457.38F-box protein SKIP16 OS=Arabidopsis thaliana GN=SK... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YK06FM1 TF Citrus clementina cDNA clone KN0AAP8YK06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925477 ID=FC925477; Name=FC925477; organism=Citrus clementina; type=EST; length=767bp
CCAAAAAAAAAAAAATAATTATGGGGTTTGGAGAGTGTTGGCGATTTGGC
TTTGAACGTAATACTATCAGGGCTGGGGCCAAAAGACACGGCCAAAGTGG
CATGTCTCAGCAAAAGATTTAAGGCTGCTGCCTCTGAAGAGTGTCTCTGG
TCCAAATTTTGCTCCGATGATCTTGATCTTGCCTCCCCTCTTGACCCTCT
TGGAAACCCTGCTCCTTCTTTCAAGGCAGCTTATCAGATATGGCGGGAAG
CTTTTGGCATGTATCCATGGCCTCTTGTCAAACGAGTTAAAAGATGTTGG
GATAGACTTAAAAACTGGTTGGCGGAAAATTTCCCAGAGGCTAAGGCTAC
TCTTCGAAAGGGTGCATCAGAAGCAGATATTCAACAGCTGGAAAAAAGTT
TGAAAGTTAAGCTGCCCGTCCCGACAAGGATTCTCTATCGTTTTTGTGAT
GGTCAAGAATGCCAGACTGATGATTTTGAAAGCATAGGTTCAATGGGCCT
CATTGGTGGATACTCTTTTTGTGGGCATCTGGTAAATGTATACTTGATAC
CTTTGAGTCACATTATTATGGAAACAAAGGAGATCAGACGCCACTTGGAT
TTTCCCAGCAGAGATAAATATGTGGTTGTGGCCTCTTCTTCCACATATAG
TGAAAAGTTTTTCTTCCTCAATTGTACCAATGGCCAACTATATGTTGGTA
CCAAGAATCTTCTGTCAGATGGAGAAATGATTCCATGTGTACCCAACGCA
CTGAATAGCCTTGGGGC
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