FC925480

Overview
NameFC925480
Unique NameFC925480
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length482
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1416 contig Ccv1_Contig1416:1..482. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC925480 vs. ExPASy Swiss-Prot
Match: COG2_HUMAN (Conserved oligomeric Golgi complex subunit 2 OS=Homo sapiens GN=COG2 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.773e-17
Identity = 48/161 (29.81%), Postives = 85/161 (52.80%), Query Frame = 3 
Query:   15 LLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFSNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLD-----ISSAQNSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYQSSLDFLAYLEGYCPSRS 482
            +L  SL    + GL+  + ++I +CLR YA ID TR+AE +    +V P + ++I     E    +  + L+  Y ++ + V   C+ L +     ISS + + +  +DFL NS+  +++  +++  P  F+PG P  F   Y  S+DF+  LE  C S++
Sbjct:  206 MLQQSLEGLLLEGLQTSDVDIIRHCLRTYATIDKTRDAEALVGQVLVKPYIDEVI----IEQFVESHPNGLQVMYNKLLEFVPHHCRLLREVTGGAISSEKGNTVPGYDFLVNSVWPQIVQGLEEKLPSLFNPGNPDAFHEKYTISMDFVRRLERQCGSQA 362
[Close]
BLAST of FC925480 vs. ExPASy Swiss-Prot
Match: COG2_MOUSE (Conserved oligomeric Golgi complex subunit 2 OS=Mus musculus GN=Cog2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.915e-15
Identity = 45/161 (27.95%), Postives = 84/161 (52.17%), Query Frame = 3 
Query:   15 LLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFSNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDI-----SSAQNSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYQSSLDFLAYLEGYCPSRS 482
            +L  SL    + GL+  + +++ +CLR YA ID T++AE +    +V P + ++I     E    +    L+  Y ++ + V   C+ L ++     SS + + +  +DFL NS+  E++  +++  P  F+PG P  F + Y  S+DF+   E  C S++
Sbjct:  206 MLQQSLEGLLLEGLQTSDVDIVRHCLRTYATIDKTQDAEALVGQVLVKPYVNEVIV----EQFVESHPSGLQLMYNKLLEFVPHHCRLLREVTGGAVSSEKGTIVPGYDFLVNSVWPEIVRGLEEKLPSLFNPGDPDAFHQKYTVSMDFVQRFERQCGSQA 362
The following BLAST results are available for this feature:
BLAST of FC925480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
COG2_HUMAN7.773e-1729.81Conserved oligomeric Golgi complex subunit 2 OS=Ho... [more]
COG2_MOUSE1.915e-1527.95Conserved oligomeric Golgi complex subunit 2 OS=Mu... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YF06FM1 TF Citrus clementina cDNA clone KN0AAP11YF06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925480 ID=FC925480; Name=FC925480; organism=Citrus clementina; type=EST; length=482bp
AAAGTGCTAGCCTTTTACTGGATGCTAGCTTGGGACATTGTTTTGTGCAT
GGTCTTGAACACCAGAATGCAAATGTAATTTACAACTGTTTGCGTGCCTA
TGCTGCCATCGACAACACCCGGAATGCAGAAGAAATTTTTTCCAATACTG
TTGTGGCTCCGTTGATGCAGAAAATTATCCCGCACGGGCCATCGGAGGCA
CTGGCTGGGGCATCTGGAGATGAACTTGAGAGTGATTATGAACAAATCAA
GCAATGTGTTGAAAAAGACTGTAAATTTTTGTTGGATATATCTTCTGCAC
AAAATTCTGGTTTGCATGTATTTGACTTCCTGGCCAATTCCATCCTGAAG
GAGGTTCTCTCCGCCATTCAGAAGGGAAAACCAGGGGCGTTTTCTCCCGG
AAGACCTACACAGTTCTTGAGAAATTACCAATCAAGCTTGGATTTCTTGG
CTTATCTTGAAGGTTATTGTCCATCCAGATCT
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