FC925495
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: DPO1_BACST (DNA polymerase I OS=Bacillus stearothermophilus GN=polA PE=1 SV=2) HSP 1 Score: 132.88 bits (333), Expect = 1.780e-30 Identity = 75/188 (39.89%), Postives = 115/188 (61.17%), Query Frame = 1 Query: 4 TPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGF-DMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLPFYMVPFTTGDIAFE 564 TP + + L+ +KA + E+ EADD+IGT+A R+ GF V+V+S D+D Q+ SP + + I +G D+ S+ E KYG L P Q VD+ L+GDK+DNIPGV GIG+ AV+L+ +FG++EN+L +D+++ E+ ++ L + D A+LSK LA + D P V T DI ++ Sbjct: 80 TPPELSEQFPLLRELLKAYRIPAYELDHYEADDIIGTMAARAEREGFAVKVISGDRDLTQLASPQVTV-EITKKGITDIESYTPETVVEKYG-LTPEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQYRDLALLSKQLAAICRDAP---VELTLDDIVYK 262
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: DPO1_BACCA (DNA polymerase I OS=Bacillus caldotenax GN=polA PE=1 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.780e-30 Identity = 74/188 (39.36%), Postives = 116/188 (61.70%), Query Frame = 1 Query: 4 TPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGF-DMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLPFYMVPFTTGDIAFE 564 TP + + L+ ++A + E+ EADD+IGTLA R+ GF+V+V+S D+D Q+ SP + + I +G D+ + E KYG L P Q VD+ L+GDK+DNIPGV GIG+ AV+L+ +FG++EN+L +D+++ E+ ++ L + A+LSK LA +R D P V + DIA++ Sbjct: 80 TPPELSEQFPLLRELLRAYRIPAYELENYEADDIIGTLAARAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPEAVREKYG-LTPEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLRQFGTVENVLASIDEIKGEKLKETLRQHREMALLSKKLAAIRRDAP---VELSLDDIAYQ 262
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: DPO1_THEFI (DNA polymerase I, thermostable OS=Thermus filiformis GN=polA PE=1 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.410e-27 Identity = 68/174 (39.08%), Postives = 111/174 (63.79%), Query Frame = 1 Query: 1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLP 522 PTP+ + L +K + + + +E PG EADDV+GTLA ++ G +VR+++ D+DFFQ+LS + +L P G + +D KYG + P ++VD +L GD++DNIPGV GIG+ A++L+ ++GS+ENLL+ +D+V+ + R+ + + LS +LA +R DLP Sbjct: 86 PTPEDFPRQLALVKRLVDLLGLVRLEAPGYEADDVLGTLAKKAEREGMEVRILTGDRDFFQLLSEKVSVL--LPDGTLVTP---KDVQEKYG-VPPERWVDFRALTGDRSDNIPGVAGIGEKTALRLLAEWGSVENLLKNLDRVKPDSLRRKIEAHLEDLHLSLDLARIRTDLP 253
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: DPO1T_THET8 (DNA polymerase I, thermostable OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=polA PE=3 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 1.410e-27 Identity = 68/174 (39.08%), Postives = 110/174 (63.22%), Query Frame = 1 Query: 1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLP 522 PTP+ + L +K + + +EVPG EADDV+ TLA ++ G++VR+++ D+D +Q++S + +L P G + E KYG L+P Q+VD +LVGD +DN+PGV+GIG+ A++L+ ++GSLENLL+ +D+V+ E R+ + + LS L+ +R DLP Sbjct: 88 PTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDVLATLAKKAEKEGYEVRILTADRDLYQLVSDRVAVLH--PEGHLITP---EWLWEKYG-LRPEQWVDFRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVKPENVREKIKAHLEDLRLSLELSRVRTDLP 255
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: DPO1F_THETH (DNA polymerase I, thermostable OS=Thermus thermophilus GN=polA PE=1 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.405e-27 Identity = 70/174 (40.23%), Postives = 109/174 (62.64%), Query Frame = 1 Query: 1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLP 522 PTP+ + L +K + + + +EVPG EADDV+ TLA R+ G++VR+++ D+D +Q+LS + +L P G+ + + + KYG L+P Q+VD +L GD +DNIPGV+GIG+ A +LI ++GSLENL Q +DQV+ R+ L + LS+ L+ + DLP Sbjct: 86 PTPEDFPRQLALIKELVDLLGLVRLEVPGFEADDVLATLAKRAEKEGYEVRILTADRDLYQLLSERIAILH--PEGYLITPAWLYE---KYG-LRPEQWVDYRALAGDPSDNIPGVKGIGEKTAQRLIREWGSLENLFQHLDQVKPS-LREKLQAGMEALALSRKLSQVHTDLP 252
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: DPO1_THECA (DNA polymerase I, thermostable OS=Thermus caldophilus GN=polA PE=1 SV=2) HSP 1 Score: 120.939 bits (302), Expect = 6.998e-27 Identity = 69/174 (39.66%), Postives = 108/174 (62.07%), Query Frame = 1 Query: 1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLP 522 PTP+ + L +K + + +EVPG EADDV+ TLA G++VR+++ D+D Q++S + +L P G + E +KYG LKP Q+VD +LVGD +DN+PGV+GIG+ A++L+ ++GSLENLL+ +D+V+ E R+ + + LS L+ +R DLP Sbjct: 88 PTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDVLATLAKNPEKEGYEVRILTADRDLDQLVSDRVAVLH--PEGHLITP---EWLWQKYG-LKPEQWVDFRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVKPENVREKIKAHLEDLRLSLELSRVRTDLP 255
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: DPO1_BACSU (DNA polymerase I OS=Bacillus subtilis GN=polA PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 5.924e-26 Identity = 65/174 (37.36%), Postives = 104/174 (59.77%), Query Frame = 1 Query: 4 TPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGF-DMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLP 522 TP + + + +++ + A + E+ EADD+IGTLA + GF+V+V S DKD Q L+ + I +G D+ + E KYG L P Q +D+ L+GD +DNIPGV G+G+ A++L+ +F S+E LL+ +D+V ++ ++ L F DQA++SK LA + D P Sbjct: 82 TPPELSEQMPFIRELLDAYQISRYELEQYEADDIIGTLAKSAEKDGFEVKVFSGDKDLTQ-LATDKTTVAITRKGITDVEFYTPEHVKEKYG-LTPEQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFDSVEKLLESIDEVSGKKLKEKLEEFKDQALMSKELATIMTDAP 253
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: DPO1_THEAQ (DNA polymerase I, thermostable OS=Thermus aquaticus GN=polA PE=1 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.940e-25 Identity = 65/174 (37.36%), Postives = 111/174 (63.79%), Query Frame = 1 Query: 1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLP 522 PTP+ + L +K + + + +EVPG EADDV+ +LA ++ G++VR+++ DKD +Q+LS + +L P G+ + + + KYG L+P Q+ D +L GD++DN+PGV+GIG+ A +L+ ++GSLE LL+ +D++ + R+ ++ D LS +LA +R DLP Sbjct: 87 PTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEKEGYEVRILTADKDLYQLLSDRIHVLH--PEGYLITPAWLWE---KYG-LRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRL-KPAIREKILAHMDDLKLSWDLAKVRTDLP 253
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: DPO1_ANATD (DNA polymerase I OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=polA PE=3 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 2.752e-23 Identity = 63/177 (35.59%), Postives = 106/177 (59.89%), Query Frame = 1 Query: 1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMAS---FGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLP 522 P PD + + Y++ + A ++ +IE G EADDVIG+L + + G + +++ D+D Q+L ++ +++I FD + +E+ KYG + +Q D +LVGD++DNIPGV+GIG+ A +L+ ++ SLE + Q +D+++ R+ L D A LSK LA + CDLP Sbjct: 77 PMPDNLQVQIPYVREILYAFNIPIIEFEGYEADDVIGSLVNQFKNTGLDIVIITGDRDTLQLLDKNV-VVKIVSTKFDKTVEDLYTVENVKEKYG-VWANQVPDYKALVGDQSDNIPGVKGIGEKSAQKLLEEYSSLEEIYQNLDKIKSS-IREKLEAGKDMAFLSKRLATIVCDLP 250
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: EX53_AQUAE (5'-3' exonuclease OS=Aquifex aeolicus GN=aq_1628 PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.694e-23 Identity = 65/191 (34.03%), Postives = 108/191 (56.54%), Query Frame = 1 Query: 7 PDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLPFYMVPFTTGDIAFEKPKDN 579 PD + + +K +K + ++E+PG EADDVI LA + GFKV++ SPDKD Q++S ++ L I P ++ F E +K+G ++P + D ++LVGDK DN+PG+EG+G A+ ++ K+GS+EN+L+ ++ + E R + LS L L DL + + D+ ++P N Sbjct: 80 PDPLKVQIPVIKEILKLAGIPLLELPGYEADDVIAYLAEKFSQKGFKVKIYSPDKDLLQLVSENV--LVINPMNDEV--FTKERVIKKFG-VEPQKIPDYLALVGDKVDNVPGIEGVGPKTAINILKKYGSVENILKNWEKFQREFPRAK----KEDLELSYKLVKLYTDLD---IELSEEDLKIKRPDLN 258 The following BLAST results are available for this feature:
BLAST of FC925495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 139
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925495 ID=FC925495; Name=FC925495; organism=Citrus clementina; type=EST; length=736bpback to top |