FC925495

Overview
NameFC925495
Unique NameFC925495
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: DPO1_BACST (DNA polymerase I OS=Bacillus stearothermophilus GN=polA PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.780e-30
Identity = 75/188 (39.89%), Postives = 115/188 (61.17%), Query Frame = 1
Query:    4 TPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGF-DMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLPFYMVPFTTGDIAFE 564
            TP  + +    L+  +KA  +   E+   EADD+IGT+A R+   GF V+V+S D+D  Q+ SP + +  I  +G  D+ S+  E    KYG L P Q VD+  L+GDK+DNIPGV GIG+  AV+L+ +FG++EN+L  +D+++ E+ ++ L  + D A+LSK LA +  D P   V  T  DI ++
Sbjct:   80 TPPELSEQFPLLRELLKAYRIPAYELDHYEADDIIGTMAARAEREGFAVKVISGDRDLTQLASPQVTV-EITKKGITDIESYTPETVVEKYG-LTPEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQYRDLALLSKQLAAICRDAP---VELTLDDIVYK 262          
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: DPO1_BACCA (DNA polymerase I OS=Bacillus caldotenax GN=polA PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.780e-30
Identity = 74/188 (39.36%), Postives = 116/188 (61.70%), Query Frame = 1
Query:    4 TPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGF-DMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLPFYMVPFTTGDIAFE 564
            TP  + +    L+  ++A  +   E+   EADD+IGTLA R+   GF+V+V+S D+D  Q+ SP + +  I  +G  D+  +  E    KYG L P Q VD+  L+GDK+DNIPGV GIG+  AV+L+ +FG++EN+L  +D+++ E+ ++ L    + A+LSK LA +R D P   V  +  DIA++
Sbjct:   80 TPPELSEQFPLLRELLRAYRIPAYELENYEADDIIGTLAARAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPEAVREKYG-LTPEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLRQFGTVENVLASIDEIKGEKLKETLRQHREMALLSKKLAAIRRDAP---VELSLDDIAYQ 262          
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: DPO1_THEFI (DNA polymerase I, thermostable OS=Thermus filiformis GN=polA PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.410e-27
Identity = 68/174 (39.08%), Postives = 111/174 (63.79%), Query Frame = 1
Query:    1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLP 522
            PTP+   + L  +K  +  + +  +E PG EADDV+GTLA ++   G +VR+++ D+DFFQ+LS  + +L   P G  +     +D   KYG + P ++VD  +L GD++DNIPGV GIG+  A++L+ ++GS+ENLL+ +D+V+ +  R+ +    +   LS +LA +R DLP
Sbjct:   86 PTPEDFPRQLALVKRLVDLLGLVRLEAPGYEADDVLGTLAKKAEREGMEVRILTGDRDFFQLLSEKVSVL--LPDGTLVTP---KDVQEKYG-VPPERWVDFRALTGDRSDNIPGVAGIGEKTALRLLAEWGSVENLLKNLDRVKPDSLRRKIEAHLEDLHLSLDLARIRTDLP 253          
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: DPO1T_THET8 (DNA polymerase I, thermostable OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=polA PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.410e-27
Identity = 68/174 (39.08%), Postives = 110/174 (63.22%), Query Frame = 1
Query:    1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLP 522
            PTP+   + L  +K  +  +    +EVPG EADDV+ TLA ++   G++VR+++ D+D +Q++S  + +L   P G  +     E    KYG L+P Q+VD  +LVGD +DN+PGV+GIG+  A++L+ ++GSLENLL+ +D+V+ E  R+ +    +   LS  L+ +R DLP
Sbjct:   88 PTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDVLATLAKKAEKEGYEVRILTADRDLYQLVSDRVAVLH--PEGHLITP---EWLWEKYG-LRPEQWVDFRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVKPENVREKIKAHLEDLRLSLELSRVRTDLP 255          
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: DPO1F_THETH (DNA polymerase I, thermostable OS=Thermus thermophilus GN=polA PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.405e-27
Identity = 70/174 (40.23%), Postives = 109/174 (62.64%), Query Frame = 1
Query:    1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLP 522
            PTP+   + L  +K  +  + +  +EVPG EADDV+ TLA R+   G++VR+++ D+D +Q+LS  + +L   P G+ +    + +   KYG L+P Q+VD  +L GD +DNIPGV+GIG+  A +LI ++GSLENL Q +DQV+    R+ L    +   LS+ L+ +  DLP
Sbjct:   86 PTPEDFPRQLALIKELVDLLGLVRLEVPGFEADDVLATLAKRAEKEGYEVRILTADRDLYQLLSERIAILH--PEGYLITPAWLYE---KYG-LRPEQWVDYRALAGDPSDNIPGVKGIGEKTAQRLIREWGSLENLFQHLDQVKPS-LREKLQAGMEALALSRKLSQVHTDLP 252          
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: DPO1_THECA (DNA polymerase I, thermostable OS=Thermus caldophilus GN=polA PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.998e-27
Identity = 69/174 (39.66%), Postives = 108/174 (62.07%), Query Frame = 1
Query:    1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLP 522
            PTP+   + L  +K  +  +    +EVPG EADDV+ TLA      G++VR+++ D+D  Q++S  + +L   P G  +     E   +KYG LKP Q+VD  +LVGD +DN+PGV+GIG+  A++L+ ++GSLENLL+ +D+V+ E  R+ +    +   LS  L+ +R DLP
Sbjct:   88 PTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDVLATLAKNPEKEGYEVRILTADRDLDQLVSDRVAVLH--PEGHLITP---EWLWQKYG-LKPEQWVDFRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVKPENVREKIKAHLEDLRLSLELSRVRTDLP 255          
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: DPO1_BACSU (DNA polymerase I OS=Bacillus subtilis GN=polA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.924e-26
Identity = 65/174 (37.36%), Postives = 104/174 (59.77%), Query Frame = 1
Query:    4 TPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGF-DMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLP 522
            TP  + + + +++  + A  +   E+   EADD+IGTLA  +   GF+V+V S DKD  Q L+     + I  +G  D+  +  E    KYG L P Q +D+  L+GD +DNIPGV G+G+  A++L+ +F S+E LL+ +D+V  ++ ++ L  F DQA++SK LA +  D P
Sbjct:   82 TPPELSEQMPFIRELLDAYQISRYELEQYEADDIIGTLAKSAEKDGFEVKVFSGDKDLTQ-LATDKTTVAITRKGITDVEFYTPEHVKEKYG-LTPEQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFDSVEKLLESIDEVSGKKLKEKLEEFKDQALMSKELATIMTDAP 253          
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: DPO1_THEAQ (DNA polymerase I, thermostable OS=Thermus aquaticus GN=polA PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.940e-25
Identity = 65/174 (37.36%), Postives = 111/174 (63.79%), Query Frame = 1
Query:    1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLP 522
            PTP+   + L  +K  +  + +  +EVPG EADDV+ +LA ++   G++VR+++ DKD +Q+LS  + +L   P G+ +    + +   KYG L+P Q+ D  +L GD++DN+PGV+GIG+  A +L+ ++GSLE LL+ +D++ +   R+ ++   D   LS +LA +R DLP
Sbjct:   87 PTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEKEGYEVRILTADKDLYQLLSDRIHVLH--PEGYLITPAWLWE---KYG-LRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRL-KPAIREKILAHMDDLKLSWDLAKVRTDLP 253          
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: DPO1_ANATD (DNA polymerase I OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=polA PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.752e-23
Identity = 63/177 (35.59%), Postives = 106/177 (59.89%), Query Frame = 1
Query:    1 PTPDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMAS---FGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLP 522
            P PD +   + Y++  + A ++ +IE  G EADDVIG+L  +  + G  + +++ D+D  Q+L  ++ +++I    FD      + +E+   KYG +  +Q  D  +LVGD++DNIPGV+GIG+  A +L+ ++ SLE + Q +D+++    R+ L    D A LSK LA + CDLP
Sbjct:   77 PMPDNLQVQIPYVREILYAFNIPIIEFEGYEADDVIGSLVNQFKNTGLDIVIITGDRDTLQLLDKNV-VVKIVSTKFDKTVEDLYTVENVKEKYG-VWANQVPDYKALVGDQSDNIPGVKGIGEKSAQKLLEEYSSLEEIYQNLDKIKSS-IREKLEAGKDMAFLSKRLATIVCDLP 250          
BLAST of FC925495 vs. ExPASy Swiss-Prot
Match: EX53_AQUAE (5'-3' exonuclease OS=Aquifex aeolicus GN=aq_1628 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.694e-23
Identity = 65/191 (34.03%), Postives = 108/191 (56.54%), Query Frame = 1
Query:    7 PDTIVQGLQYLKASIKAMSVKVIEVPGVEADDVIGTLAVRSVDAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFDMASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGSLENLLQCVDQVEEERTRKALMTFADQAVLSKNLALLRCDLPFYMVPFTTGDIAFEKPKDN 579
            PD +   +  +K  +K   + ++E+PG EADDVI  LA +    GFKV++ SPDKD  Q++S ++  L I P   ++  F  E   +K+G ++P +  D ++LVGDK DN+PG+EG+G   A+ ++ K+GS+EN+L+  ++ + E  R       +   LS  L  L  DL    +  +  D+  ++P  N
Sbjct:   80 PDPLKVQIPVIKEILKLAGIPLLELPGYEADDVIAYLAEKFSQKGFKVKIYSPDKDLLQLVSENV--LVINPMNDEV--FTKERVIKKFG-VEPQKIPDYLALVGDKVDNVPGIEGVGPKTAINILKKYGSVENILKNWEKFQREFPRAK----KEDLELSYKLVKLYTDLD---IELSEEDLKIKRPDLN 258          
The following BLAST results are available for this feature:
BLAST of FC925495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
DPO1_BACST1.780e-3039.89DNA polymerase I OS=Bacillus stearothermophilus GN... [more]
DPO1_BACCA1.780e-3039.36DNA polymerase I OS=Bacillus caldotenax GN=polA PE... [more]
DPO1_THEFI1.410e-2739.08DNA polymerase I, thermostable OS=Thermus filiform... [more]
DPO1T_THET81.410e-2739.08DNA polymerase I, thermostable OS=Thermus thermoph... [more]
DPO1F_THETH2.405e-2740.23DNA polymerase I, thermostable OS=Thermus thermoph... [more]
DPO1_THECA6.998e-2739.66DNA polymerase I, thermostable OS=Thermus caldophi... [more]
DPO1_BACSU5.924e-2637.36DNA polymerase I OS=Bacillus subtilis GN=polA PE=3... [more]
DPO1_THEAQ2.940e-2537.36DNA polymerase I, thermostable OS=Thermus aquaticu... [more]
DPO1_ANATD2.752e-2335.59DNA polymerase I OS=Anaerocellum thermophilum (str... [more]
EX53_AQUAE4.694e-2334.035'-3' exonuclease OS=Aquifex aeolicus GN=aq_1628 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YJ04FM1 TF Citrus clementina cDNA clone KN0AAP3YJ04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925495 ID=FC925495; Name=FC925495; organism=Citrus clementina; type=EST; length=736bp
CCTACACCTGATACTATAGTTCAGGGGCTTCAATATTTGAAAGCATCCAT
CAAGGCTATGTCCGTTAAGGTGATTGAGGTACCTGGTGTGGAAGCTGACG
ATGTGATTGGGACATTGGCTGTGAGGAGTGTTGATGCTGGGTTCAAGGTA
CGAGTTGTCTCCCCAGATAAAGACTTCTTTCAGATTCTCTCGCCTTCATT
ACGTCTTCTACGGATTGCACCCCGTGGATTTGACATGGCTTCATTTGGGA
TGGAGGATTTTGCTAGAAAGTATGGAGAACTGAAACCTTCGCAGTTTGTC
GATGTGATTTCTCTTGTGGGTGACAAAGCTGATAATATTCCAGGAGTTGA
AGGGATTGGAGACGTTCGTGCGGTGCAACTCATTACAAAATTTGGATCGT
TGGAGAATTTGTTGCAATGTGTTGATCAAGTTGAGGAGGAACGTACGAGA
AAGGCGTTGATGACTTTTGCTGATCAAGCTGTTCTAAGCAAGAACTTGGC
ATTACTACGCTGTGATCTTCCGTTCTACATGGTACCATTTACTACTGGAG
ATATTGCATTTGAAAAACCAAAGGATAATGGGGAGAAATTCACAAGCCTG
TTGACTGCCATAAGTGCCTATGCAGAGGGGTTTTCGGCCGATCCAATAAT
AAGGAGAGCCATATATTTGTGGAAAAAACTTGAAGCTCAGTGTTGAAATT
GTCTTACACACTCATACTCAATGAGCTGCCTAACCT
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