FC925499

Overview
NameFC925499
Unique NameFC925499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925499 vs. ExPASy Swiss-Prot
Match: RS24_ARATH (40S ribosomal protein S2-4 OS=Arabidopsis thaliana GN=RPS2D PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 2.525e-45
Identity = 88/100 (88.00%), Postives = 95/100 (95.00%), Query Frame = 2
Query:  149 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILA 448
            KWVPVTKLGRLV+EGKI  +EQIYLHSLP+KEYQIID L+G  LKDEVMKIMPVQKQTRAGQRTRFKAF+VVGD++GHVGLGVKCSKEVATAIRGAIILA
Sbjct:   44 KWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILA 143          
BLAST of FC925499 vs. ExPASy Swiss-Prot
Match: RS23_ARATH (40S ribosomal protein S2-3 OS=Arabidopsis thaliana GN=RPS2C PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 1.061e-43
Identity = 88/100 (88.00%), Postives = 92/100 (92.00%), Query Frame = 2
Query:  149 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILA 448
            KWVPVTKLGRLV  G I+ +EQIYLHSLP+KEYQIID LIG  LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILA
Sbjct:   53 KWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILA 152          
BLAST of FC925499 vs. ExPASy Swiss-Prot
Match: RS22_ARATH (40S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.061e-43
Identity = 88/100 (88.00%), Postives = 92/100 (92.00%), Query Frame = 2
Query:  149 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILA 448
            KWVPVTKLGRLV + KI  LEQIYLHSLP+KEYQIID L+G  LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILA
Sbjct:   52 KWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILA 151          
BLAST of FC925499 vs. ExPASy Swiss-Prot
Match: RS21_ARATH (40S ribosomal protein S2-1 OS=Arabidopsis thaliana GN=RPS2A PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 1.061e-43
Identity = 88/100 (88.00%), Postives = 92/100 (92.00%), Query Frame = 2
Query:  149 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILA 448
            KWVPVTKLGRLV + KI  LEQIYLHSLP+KEYQIID L+G  LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILA
Sbjct:   52 KWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILA 151          
BLAST of FC925499 vs. ExPASy Swiss-Prot
Match: RS2_DROME (40S ribosomal protein S2 OS=Drosophila melanogaster GN=sop PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 6.876e-43
Identity = 83/100 (83.00%), Postives = 94/100 (94.00%), Query Frame = 2
Query:  149 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILA 448
            +WVPVTKLGRLVREGKI+SLE+IYL+SLPIKE++IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GH+GLGVKCSKEVATAIRGAIILA
Sbjct:   42 EWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 141          
BLAST of FC925499 vs. ExPASy Swiss-Prot
Match: RS2_ICTPU (40S ribosomal protein S2 OS=Ictalurus punctatus GN=rps2 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.446e-40
Identity = 81/100 (81.00%), Postives = 92/100 (92.00%), Query Frame = 2
Query:  149 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILA 448
            +WVPVTKLGRLV++ KI+SLE+IYL+SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILA
Sbjct:   44 EWVPVTKLGRLVKDMKIKSLEEIYLYSLPIKESEIIDFFLGSALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILA 143          
BLAST of FC925499 vs. ExPASy Swiss-Prot
Match: RS2_URECA (40S ribosomal protein S2 OS=Urechis caupo GN=RPS2 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 3.194e-40
Identity = 80/100 (80.00%), Postives = 92/100 (92.00%), Query Frame = 2
Query:  149 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILA 448
            +WVPVTKLGRLV++ KI++LE+IYL SLPIKE++IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILA
Sbjct:   45 EWVPVTKLGRLVKDMKIKTLEEIYLFSLPIKEFEIIDFFLGDALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILA 144          
BLAST of FC925499 vs. ExPASy Swiss-Prot
Match: RS2_RAT (40S ribosomal protein S2 OS=Rattus norvegicus GN=Rps2 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 7.116e-40
Identity = 80/100 (80.00%), Postives = 91/100 (91.00%), Query Frame = 2
Query:  149 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILA 448
            +W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILA
Sbjct:   59 EWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILA 158          
BLAST of FC925499 vs. ExPASy Swiss-Prot
Match: RS2_MOUSE (40S ribosomal protein S2 OS=Mus musculus GN=Rps2 PE=1 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 7.116e-40
Identity = 80/100 (80.00%), Postives = 91/100 (91.00%), Query Frame = 2
Query:  149 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILA 448
            +W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILA
Sbjct:   59 EWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILA 158          
BLAST of FC925499 vs. ExPASy Swiss-Prot
Match: RS2_SCHPO (40S ribosomal protein S2 OS=Schizosaccharomyces pombe GN=rps2 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.214e-39
Identity = 77/99 (77.78%), Postives = 93/99 (93.94%), Query Frame = 2
Query:  149 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIIL 445
            +WVPVTKLGRLV+ GKI+S+E+IYL+SLPIKEYQI+D  +  +L DEVMK++PVQKQTRAGQRTRFKAFVV+GD+DGHVGLG+KC+KEVATAIRGAII+
Sbjct:   33 EWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFLP-RLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIM 130          
The following BLAST results are available for this feature:
BLAST of FC925499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS24_ARATH2.525e-4588.0040S ribosomal protein S2-4 OS=Arabidopsis thaliana... [more]
RS23_ARATH1.061e-4388.0040S ribosomal protein S2-3 OS=Arabidopsis thaliana... [more]
RS22_ARATH1.061e-4388.0040S ribosomal protein S2-2 OS=Arabidopsis thaliana... [more]
RS21_ARATH1.061e-4388.0040S ribosomal protein S2-1 OS=Arabidopsis thaliana... [more]
RS2_DROME6.876e-4383.0040S ribosomal protein S2 OS=Drosophila melanogaste... [more]
RS2_ICTPU2.446e-4081.0040S ribosomal protein S2 OS=Ictalurus punctatus GN... [more]
RS2_URECA3.194e-4080.0040S ribosomal protein S2 OS=Urechis caupo GN=RPS2 ... [more]
RS2_RAT7.116e-4080.0040S ribosomal protein S2 OS=Rattus norvegicus GN=R... [more]
RS2_MOUSE7.116e-4080.0040S ribosomal protein S2 OS=Mus musculus GN=Rps2 P... [more]
RS2_SCHPO1.214e-3977.7840S ribosomal protein S2 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YJ06FM1 TF Citrus clementina cDNA clone KN0AAP3YJ06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925499 ID=FC925499; Name=FC925499; organism=Citrus clementina; type=EST; length=448bp
CTTCACTCCCTATACACACAAGAACAAAACCATGGCTGAACGAGGTGGCG
AGCGCGGTGCATTCGGACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGT
GGAGGCCCACGTGGCCGTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAA
GTGGGTCCCAGTCACGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCA
GGAGCCTCGAGCAAATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAA
ATCATCGACACGCTTATCGGCCACAAATTGAAGGACGAGGTCATGAAGAT
CATGCCGGTGCAGAAACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGG
CCTTCGTCGTCGTCGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAG
TGCTCCAAAGAGGTTGCCACTGCCATCCGTGGCGCTATCATATTGGCG
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