FC925503

Overview
NameFC925503
Unique NameFC925503
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length643
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC925503 vs. ExPASy Swiss-Prot
Match: B3GTC_ARATH (Probable beta-1,3-galactosyltransferase 12 OS=Arabidopsis thaliana GN=B3GALT12 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.940e-16
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 3 
Query:    3 STEDVTIGSWMLAMNVHHEDNRAICDPRCTSTSIAVWDIPKCSG 134
            + EDVTIGSWMLAM+VHHEDNRA+CDP C+  SIAVWDIPKCSG
Sbjct:  298 NNEDVTIGSWMLAMDVHHEDNRALCDPHCSPKSIAVWDIPKCSG 341
[Close]
BLAST of FC925503 vs. ExPASy Swiss-Prot
Match: B3GTE_ARATH (Probable beta-1,3-galactosyltransferase 14 OS=Arabidopsis thaliana GN=B3GALT14 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.424e-13
Identity = 29/44 (65.91%), Postives = 39/44 (88.64%), Query Frame = 3 
Query:    3 STEDVTIGSWMLAMNVHHEDNRAICDPRCTSTSIAVWDIPKCSG 134
            + EDVTIG+WMLAMNV+HE++  +C+P C+ +S+AVWDIPKCSG
Sbjct:  274 NNEDVTIGAWMLAMNVNHENHHILCEPECSPSSVAVWDIPKCSG 317
[Close]
BLAST of FC925503 vs. ExPASy Swiss-Prot
Match: B3GTD_ARATH (Probable beta-1,3-galactosyltransferase 13 OS=Arabidopsis thaliana GN=B3GALT13 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.840e-13
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 3 
Query:    3 STEDVTIGSWMLAMNVHHEDNRAICDPRCTSTSIAVWDIPKCSG 134
            S EDVTIG+WMLAMNV+HE+   +C+P C+  SIAVWDIPKCSG
Sbjct:  272 SNEDVTIGAWMLAMNVNHENLHTLCEPECSPYSIAVWDIPKCSG 315
The following BLAST results are available for this feature:
BLAST of FC925503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
B3GTC_ARATH1.940e-1681.82Probable beta-1,3-galactosyltransferase 12 OS=Arab... [more]
B3GTE_ARATH3.424e-1365.91Probable beta-1,3-galactosyltransferase 14 OS=Arab... [more]
B3GTD_ARATH5.840e-1370.45Probable beta-1,3-galactosyltransferase 13 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YF17FM1 TF Citrus clementina cDNA clone KN0AAP11YF17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925503 ID=FC925503; Name=FC925503; organism=Citrus clementina; type=EST; length=643bp
TCAGCACTGAGGATGTAACTATCGGGTCATGGATGCTTGCTATGAACGTC
CACCACGAAGATAACAGAGCAATATGTGATCCTAGATGTACTTCCACATC
TATAGCAGTGTGGGATATTCCAAAGTGCTCAGGTAACACAATTTTTGTAA
CTTGCCCTGCGGTAACTATGTTTCTTATTATCACATGCCCTGCTGTAATT
GTATTTCTTACTTTCTCAAAGAACTATCTTGATATGTGATTTTGATACAT
AAAAAATTAAGATTTGAAAATCCCGCTTTCTGTTTAAGTTCTGATGATCA
TGTATTCGTTACACATGAAATATGAAGGTTCCTCTTAAAAGTAGTGAGAT
TGATGGACCGCCAATTGTTAGGGTTCTGTAGGTTTGTTATGATTTTGTAT
TACATTGAGTTGATGAGATGGTGCGAAGTAAGCTATTGAATACAGGATTT
TTGCACATAACAAGTCATGGTAATGTTATAAATTTTACACGTACCTTAGG
AATATGACGAGGTAGGATGGCTGTCCCAAGGATATCAAGGTCGATAACCA
CACTACCTATAACACTCTCTGTACAAGACCCTCTATCCTATTTAGATCTT
TCTCCTTATTTGACTGCCATTATATTAAGGATGATGATTATGA
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