FC925508

Overview
NameFC925508
Unique NameFC925508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length611
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: IAA26_ARATH (Auxin-responsive protein IAA26 OS=Arabidopsis thaliana GN=IAA26 PE=2 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 7.120e-58
Identity = 116/174 (66.67%), Postives = 135/174 (77.59%), Query Frame = 3
Query:   39 KNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSA 560
            K T+VP+ SQKRTAP PVVGWPP+RSFRKNLA  S+SKL    S     +K+ D +   E  ++  FVKINMDGVPIGRKVDLNAY+SYE+LS  VD+LFRGLLAAQRD S G     Q EEK I G+LDG GE+TL YEDNEGD+MLVGDVPW MFVS+V RLRV+KSSE+S+
Sbjct:   87 KTTSVPHISQKRTAPGPVVGWPPVRSFRKNLASTSSSKLGNESSHGGQINKSDDGEKQVETKKEGMFVKINMDGVPIGRKVDLNAYNSYEQLSFVVDKLFRGLLAAQRDISDG-----QGEEKPIIGLLDGKGEFTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKSSEISS 255          
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: IAA7_ORYSJ (Auxin-responsive protein IAA7 OS=Oryza sativa subsp. japonica GN=IAA7 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 4.942e-51
Identity = 103/188 (54.79%), Postives = 134/188 (71.28%), Query Frame = 3
Query:    6 EKIAFPSSAPAKNTAVPNSS---QKRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSA 560
            E+ A P  A   N    N++   Q R+   PVVGWPP+R+FR+NLA +S + L          ++ +         ++ PF+KINMDGVPIGRK+DLNA+DSYEKLS AVD+LFRGLLAAQRD    G  + Q+E+ AI+G+LDG+GEYTLVYED EGD++LVGDVPW MFVS+V RLRVLK+S++S+
Sbjct:  108 EEEAHPPPATGNNALASNNNGCFQTRSPSTPVVGWPPVRTFRRNLATSSKASLELQNGKKAAKAEEI---------KRAPFIKINMDGVPIGRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDGTGEYTLVYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSDLSS 286          
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: IAA18_ARATH (Auxin-responsive protein IAA18 OS=Arabidopsis thaliana GN=IAA18 PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 3.203e-50
Identity = 110/177 (62.15%), Postives = 132/177 (74.58%), Query Frame = 3
Query:   45 TAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASKLPA-SESPNDVPSKTVDEKPAH---EPGRKNP-FVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSA 560
            ++   +S KRTAP PVVGWPP+RSFRKNLA  S+SKL   S + N V  K      A    EP R+   FVKINM GVPIGRKVDL+A++SYE+LS  VD+LFRGLLAAQRD       +  E+EK ITG+LDG+GEYTL YEDNEGD+MLVGDVPW MFVS+V RLRV+K+SE+S+
Sbjct:   82 SSTKTTSHKRTAPGPVVGWPPVRSFRKNLASGSSSKLGNDSTTSNGVTLKNQKCDAAAKTTEPKRQGGMFVKINMYGVPIGRKVDLSAHNSYEQLSFTVDKLFRGLLAAQRD-----FPSSIEDEKPITGLLDGNGEYTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKTSEISS 253          
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: IAA6_ORYSJ (Auxin-responsive protein IAA6 OS=Oryza sativa subsp. japonica GN=IAA6 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.538e-47
Identity = 101/180 (56.11%), Postives = 125/180 (69.44%), Query Frame = 3
Query:   21 PSSAPAKNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASK-LPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVS 557
            P  APA        +Q R A APVVGWPPIRSFR+NLA +S+SK  P  ++ N     T+  K       KNP VKINMDG+PIGRK+DL AY+SY+ LS+AV +LF G L AQ+D +   +  +  ++K    +LDGSGEYTLVYED+EGDRMLVGDVPW +FVST  RLRVL+SSE+S
Sbjct:  153 PHGAPATPARNRPQTQGRGAAAPVVGWPPIRSFRRNLASSSSSKHSPEPQNDNANAKVTLTCK-------KNPLVKINMDGIPIGRKIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTLVYEDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSELS 325          
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: IAA18_ORYSJ (Auxin-responsive protein IAA18 OS=Oryza sativa subsp. japonica GN=IAA18 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.806e-46
Identity = 99/176 (56.25%), Postives = 122/176 (69.32%), Query Frame = 3
Query:   27 SAPAKNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEV 554
            S P    A  ++ Q R A  PVVGWPPIRSFR+NL   S+ K  + E  ND      D+K A    +K P VKINMDG+PIGRKVDL  YDSY+KLS+AV+ELFRG L AQ+D S      +  E+K  +G+LDG+G YTLVYEDN+GDRML GD+PW +FVSTV RLRV++ SE+
Sbjct:  147 SPPCSAAAHSSNPQGRGAIPPVVGWPPIRSFRRNLTNGSSFK-QSPERQND----EADDK-AKPICKKRPLVKINMDGIPIGRKVDLQIYDSYQKLSSAVEELFRGFLEAQKDLSCAESGEQGAEDKIFSGLLDGTGVYTLVYEDNDGDRMLAGDIPWKVFVSTVKRLRVMRRSEL 316          
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: IAA2_ORYSJ (Auxin-responsive protein IAA2 OS=Oryza sativa subsp. japonica GN=IAA2 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.540e-44
Identity = 97/180 (53.89%), Postives = 117/180 (65.00%), Query Frame = 3
Query:   15 AFPSSAPAKNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEV 554
            A P+ A   N    +      A APVVGWPP+RSFR+NLA +S+S    +  P     +  D+        K  FVKINMDGVPIGRKVDL AY  Y +LSAAVD+LFRGLLAAQ  ++ G      E + A  G + G GEYTLVYED+EGDRMLVGDVPW MF++T  RLRVLKSS++
Sbjct:   46 AAPAFALRSNGTNASKPSGAAAAAPVVGWPPVRSFRRNLASSSSSSSKQAPPPPSSSPQNGDKASKDGGAEKGMFVKINMDGVPIGRKVDLAAYGGYAQLSAAVDKLFRGLLAAQSAAADG------EADAAAAGEMVGGGEYTLVYEDDEGDRMLVGDVPWQMFIATAKRLRVLKSSDL 219          
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: IAA16_ORYSJ (Auxin-responsive protein IAA16 OS=Oryza sativa subsp. japonica GN=IAA16 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.480e-44
Identity = 102/188 (54.26%), Postives = 129/188 (68.62%), Query Frame = 3
Query:   24 SSAPAKNTAVPNSSQKRTAPA-PVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRD-------SSAGGLVNKQEEEKAITGVLD-GSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSA 560
            +++ A + A  N   K + PA PVVGWPP+RSFR+NLA +S+S  P        P    D   A   G+   FVK+NMDGVPIGRKVDL A+  Y +LSAAVD LFRGLLAAQRD       ++A    +   EE+AI G+LD GSGEYTLVYED+EGD+MLVGDVPW+MF++   RLRVL+SS+++A
Sbjct:   35 NTSTAADGAKGNDGFKASRPAAPVVGWPPVRSFRRNLASSSSSSKP--------PRGGRDAAAAATGGKVARFVKVNMDGVPIGRKVDLAAHGGYGELSAAVDRLFRGLLAAQRDPTMATAAAAAAAGESCTGEEEAIAGLLDGGSGEYTLVYEDDEGDQMLVGDVPWNMFIAAARRLRVLRSSDLNA 214          
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: IAA28_ARATH (Auxin-responsive protein IAA28 OS=Arabidopsis thaliana GN=IAA28 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.819e-30
Identity = 77/171 (45.03%), Postives = 100/171 (58.48%), Query Frame = 3
Query:   63 SQKRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSREK 575
            S  R   APVVGWPP+RS R+NL      ++   ES  +                K  +VKINM+GVPIGRKV+L+AY++Y++LS AVD+LF     +++DS                   D + +YTLVYED EGD++LVGDVPW MFVSTV RL VLK+S   +LS  K
Sbjct:   40 SNNRVEVAPVVGWPPVRSSRRNLTAQLKEEMKKKESDEE----------------KELYVKINMEGVPIGRKVNLSAYNNYQQLSHAVDQLF-----SKKDS------------------WDLNRQYTLVYEDTEGDKVLVGDVPWEMFVSTVKRLHVLKTSHAFSLSPRK 171          
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: IAA27_ARATH (Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.682e-30
Identity = 80/189 (42.33%), Postives = 111/189 (58.73%), Query Frame = 3
Query:   48 AVPNSSQKRTAPAP-----VVGWPPIRSFRKNLAGASASKLPASESPND-VPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALS---REKCRTR 587
            AVP   +K +A AP     VVGWPPIRSFRKN   +S S+ P + S  +   +K+  E+P         +VK++M+G P  RK+DL  Y SY +LS+A++++F      Q  S  GG       E  +T +L GS EY + YED + D MLVGDVPW MF+ +  +LR++KSSE   L+    EKCR+R
Sbjct:  125 AVPVKEKKSSATAPASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCL-------YVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSH-GGCGRDGLNESRLTDLLRGS-EYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVMEKCRSR 304          
BLAST of FC925508 vs. ExPASy Swiss-Prot
Match: IAA13_ARATH (Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 9.069e-29
Identity = 77/190 (40.53%), Postives = 105/190 (55.26%), Query Frame = 3
Query:   18 FPS--SAPAKNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNP-----FVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALS 566
            FPS  S  A ++A    S    + + VVGWPPI S R N    + +   A E       K  D++P     + N      F+K+NMDGV IGRKVDLNA+ SYE L+  ++++F          +  G V    +      +LDGS E+ L YED EGD MLVGDVPW MF+++V RLRV+K+SE + L+
Sbjct:   51 FPSVGSKRAADSASHAGSSPPRSSSQVVGWPPIGSHRMNSLVNNQATKSAREEEEAGKKKVKDDEPKDVTKKVNGKVQVGFIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMFF--------RTNPGTVGLTSQFTKPLRLLDGSSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMKTSEANGLA 232          
The following BLAST results are available for this feature:
BLAST of FC925508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
IAA26_ARATH7.120e-5866.67Auxin-responsive protein IAA26 OS=Arabidopsis thal... [more]
IAA7_ORYSJ4.942e-5154.79Auxin-responsive protein IAA7 OS=Oryza sativa subs... [more]
IAA18_ARATH3.203e-5062.15Auxin-responsive protein IAA18 OS=Arabidopsis thal... [more]
IAA6_ORYSJ2.538e-4756.11Auxin-responsive protein IAA6 OS=Oryza sativa subs... [more]
IAA18_ORYSJ2.806e-4656.25Auxin-responsive protein IAA18 OS=Oryza sativa sub... [more]
IAA2_ORYSJ1.540e-4453.89Auxin-responsive protein IAA2 OS=Oryza sativa subs... [more]
IAA16_ORYSJ4.480e-4454.26Auxin-responsive protein IAA16 OS=Oryza sativa sub... [more]
IAA28_ARATH2.819e-3045.03Auxin-responsive protein IAA28 OS=Arabidopsis thal... [more]
IAA27_ARATH3.682e-3042.33Auxin-responsive protein IAA27 OS=Arabidopsis thal... [more]
IAA13_ARATH9.069e-2940.53Auxin-responsive protein IAA13 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YJ10FM1 TF Citrus clementina cDNA clone KN0AAP3YJ10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925508 ID=FC925508; Name=FC925508; organism=Citrus clementina; type=EST; length=611bp
CTGCCGAAAAGATTGCATTTCCATCTTCAGCTCCTGCAAAAAATACAGCT
GTTCCCAACAGCTCTCAGAAAAGGACTGCTCCTGCTCCAGTGGTGGGCTG
GCCTCCAATTCGTTCATTTAGGAAGAATCTTGCTGGCGCAAGTGCTTCTA
AATTACCAGCTTCTGAGTCTCCTAACGATGTCCCAAGCAAGACTGTTGAT
GAAAAACCGGCTCATGAGCCTGGCAGGAAAAACCCTTTTGTGAAGATTAA
CATGGATGGTGTCCCTATTGGAAGGAAAGTTGACCTCAATGCTTATGATA
GCTATGAAAAACTCTCAGCTGCTGTTGATGAACTCTTCAGAGGCCTCCTT
GCAGCTCAAAGAGATTCCTCTGCTGGTGGATTAGTGAACAAGCAAGAGGA
AGAGAAAGCAATTACTGGTGTTTTGGATGGAAGTGGGGAATATACCCTTG
TTTATGAGGATAACGAAGGTGACAGGATGCTGGTTGGGGATGTCCCGTGG
CACATGTTTGTATCAACAGTGACGAGGCTGCGCGTGTTGAAGAGCTCTGA
AGTTTCTGCCTTAAGCCGTGAGAAGTGCAGGACAAGATACTGGCTTGACT
GACCCATGCAT
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