FC925522

Overview
NameFC925522
Unique NameFC925522
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length770
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925522 vs. ExPASy Swiss-Prot
Match: GAPN_NICPL (NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Nicotiana plumbaginifolia GN=GAPN PE=2 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 7.446e-91
Identity = 158/169 (93.49%), Postives = 166/169 (98.22%), Query Frame = 2
Query:   50 GAPEDDCDITPVVTESSANFIEGLVMDAKQKAATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNAINFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVINLPTPSYTVG 556
            G PEDDCDITPVV+ESSANFIEGLVMDAKQK ATFCQ+YKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNA NFGLQGCVFT+DINKAILISDAMETGTVQINSAP+RGPDHFPFQG+KDSGIGSQGITNSINMMTK+K+TVINLPTPSYT+G
Sbjct:  328 GPPEDDCDITPVVSESSANFIEGLVMDAKQKNATFCQQYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTKDINKAILISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKVKTTVINLPTPSYTMG 496          
BLAST of FC925522 vs. ExPASy Swiss-Prot
Match: GAPN_WHEAT (NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Triticum aestivum GN=GAPN PE=1 SV=2)

HSP 1 Score: 328.176 bits (840), Expect = 3.128e-89
Identity = 156/169 (92.31%), Postives = 165/169 (97.63%), Query Frame = 2
Query:   50 GAPEDDCDITPVVTESSANFIEGLVMDAKQKAATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNAINFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVINLPTPSYTVG 556
            G PEDD DITPVVTESSANFIEGLVMDAK+K ATFCQEY+REGNLIWPLLLD+VRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNA NFGLQGCVFTRDINKAI+ISDAME+GTVQINSAP+RGPDHFPFQGLKDSGIGSQGITNSINMMTK+KSTVINLP+PSYT+G
Sbjct:  328 GPPEDDSDITPVVTESSANFIEGLVMDAKEKGATFCQEYRREGNLIWPLLLDHVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTRDINKAIMISDAMESGTVQINSAPARGPDHFPFQGLKDSGIGSQGITNSINMMTKVKSTVINLPSPSYTMG 496          
BLAST of FC925522 vs. ExPASy Swiss-Prot
Match: GAPN_MAIZE (NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Zea mays GN=GPN1 PE=2 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 6.969e-89
Identity = 156/169 (92.31%), Postives = 164/169 (97.04%), Query Frame = 2
Query:   50 GAPEDDCDITPVVTESSANFIEGLVMDAKQKAATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNAINFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVINLPTPSYTVG 556
            G PEDD DITPVVTESSANFIEGLVMDAK+K ATFCQEY+REGNLIWPLLLD+VRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNA NFGLQGC+FTRDINKAILISDAMETGTVQINSAP+RGPDHF FQGLKDSGIGSQGITNSINMMTK+KSTVINLP+PSYT+G
Sbjct:  330 GPPEDDSDITPVVTESSANFIEGLVMDAKEKGATFCQEYRREGNLIWPLLLDHVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCIFTRDINKAILISDAMETGTVQINSAPARGPDHFSFQGLKDSGIGSQGITNSINMMTKVKSTVINLPSPSYTMG 498          
BLAST of FC925522 vs. ExPASy Swiss-Prot
Match: GAPN_PEA (NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Pisum sativum GN=GAPN PE=1 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 5.900e-88
Identity = 153/169 (90.53%), Postives = 164/169 (97.04%), Query Frame = 2
Query:   50 GAPEDDCDITPVVTESSANFIEGLVMDAKQKAATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNAINFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVINLPTPSYTVG 556
            G PEDD DITPVV+ESSANFIEGLV DAK+K ATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNA NFGLQGCVFT+DINKAI+ISDAME+GTVQINSAP+RGPDHFPFQG+KDSGIGSQGITNSINMMTK+K+TVINLP+PSYT+G
Sbjct:  328 GPPEDDSDITPVVSESSANFIEGLVNDAKEKGATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTKDINKAIMISDAMESGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKVKTTVINLPSPSYTMG 496          
BLAST of FC925522 vs. ExPASy Swiss-Prot
Match: GAPN_APIGR (NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Apium graveolens PE=1 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 4.995e-87
Identity = 151/169 (89.35%), Postives = 163/169 (96.45%), Query Frame = 2
Query:   50 GAPEDDCDITPVVTESSANFIEGLVMDAKQKAATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNAINFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVINLPTPSYTVG 556
            G PED+ DITPVV+ESSANFIEGLV DAK+K ATFCQEYKREGNLIWPLLLDNV+PDMRIAWEEPFGP+LPVIRINS EEGIHHCNA NFGLQGCVFTRDINKA+LISDAME+GT+QINSAP+RGPDHFPFQGLKDSGIGSQGITNSINMMTKIK+TVINLP+PSYT+G
Sbjct:  328 GPPEDNSDITPVVSESSANFIEGLVKDAKEKGATFCQEYKREGNLIWPLLLDNVKPDMRIAWEEPFGPILPVIRINSAEEGIHHCNASNFGLQGCVFTRDINKAMLISDAMESGTIQINSAPARGPDHFPFQGLKDSGIGSQGITNSINMMTKIKTTVINLPSPSYTMG 496          
BLAST of FC925522 vs. ExPASy Swiss-Prot
Match: GAPN_ARATH (NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Arabidopsis thaliana GN=ALDH11A3 PE=1 SV=2)

HSP 1 Score: 317.005 bits (811), Expect = 7.212e-86
Identity = 149/169 (88.17%), Postives = 164/169 (97.04%), Query Frame = 2
Query:   50 GAPEDDCDITPVVTESSANFIEGLVMDAKQKAATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNAINFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVINLPTPSYTVG 556
            G PE++ DIT VV+ESSANFIEGLVMDAK+K ATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPV+PV+RINSVEEGI+HCNA NFGLQGCVFT+DINKAILISDAMETGTVQINSAP+RGPDHFPFQGLKDSGIGSQG+TNSIN+MTK+K+TVINLPTPSY++G
Sbjct:  328 GPPEENSDITAVVSESSANFIEGLVMDAKEKGATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVVPVLRINSVEEGINHCNASNFGLQGCVFTKDINKAILISDAMETGTVQINSAPARGPDHFPFQGLKDSGIGSQGVTNSINLMTKVKTTVINLPTPSYSMG 496          
BLAST of FC925522 vs. ExPASy Swiss-Prot
Match: GAPN_STRMU (NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus mutans GN=gapN PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 3.065e-44
Identity = 86/161 (53.42%), Postives = 108/161 (67.08%), Query Frame = 2
Query:   50 GAPEDDCDITPVVTESSANFIEGLVMDAKQKAATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNAINFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVINL 532
            G PEDD DITP++   SA+++EGL+ DA  K A    E KREGNLI P+L D V  DMR+AWEEPFGPVLP+IR+ SVEE I   N   +GLQ  +FT D  +A  I++ +E GTV IN+   RG D+FPF G K SG G QG+  SI  MT +KS V ++
Sbjct:  314 GNPEDDADITPLIDTKSADYVEGLINDANDKGAAALTEIKREGNLICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRAFGIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAGIQGVKYSIEAMTTVKSVVFDI 474          
BLAST of FC925522 vs. ExPASy Swiss-Prot
Match: GAPN_STREI (NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus equinus GN=gapN PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.829e-44
Identity = 86/161 (53.42%), Postives = 111/161 (68.94%), Query Frame = 2
Query:   50 GAPEDDCDITPVVTESSANFIEGLVMDAKQKAATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNAINFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVINL 532
            G PED+ DITP++   +A+++EGL+ DA++K A     +KREGNLI P+L DNV  DMR+AWEEPFGPVLP IR+NSVEE I   N   +GLQ  VFT +   A  I++ +E GTV IN+   RG D+FPF G K SG G QG+  SI  MT +KSTV ++
Sbjct:  314 GMPEDNADITPLIDTKAADYVEGLIKDAQEKGAKEVISFKREGNLISPVLFDNVTTDMRLAWEEPFGPVLPFIRVNSVEEAIEISNKSEYGLQASVFTNNFPLAFKIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAGVQGVKYSIEAMTTVKSTVFDI 474          
BLAST of FC925522 vs. ExPASy Swiss-Prot
Match: LADH_META3 (Lactaldehyde dehydrogenase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_1030 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.066e-24
Identity = 58/157 (36.94%), Postives = 100/157 (63.69%), Query Frame = 2
Query:   59 EDDCDITPVVTESSANFIEGLVMDAKQKAATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNAINFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVIN 529
            ++D +I+ +++  SA  +E L+  +  +        KRE ++I+P +L+ +  D  +A  E F PVLP+IR+N + E ++  N  N+GL   VFT+DINKA+  +D +E G V IN++P+   D+ PF G+K SG+G +GI  +I+ M++IK+ ++N
Sbjct:  308 DEDTNISSLISLDSAERVEKLINKSIGQGGKLICGGKRENSIIYPTILE-ITADNILANIEIFAPVLPIIRVNDMNEALNQANNSNYGLHSGVFTQDINKALYFADNLEYGGVLINNSPTFRIDNMPFGGIKHSGLGREGIKYAIDEMSEIKTIIVN 463          
BLAST of FC925522 vs. ExPASy Swiss-Prot
Match: LADH_METM7 (Lactaldehyde dehydrogenase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0731 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.850e-24
Identity = 57/153 (37.25%), Postives = 95/153 (62.09%), Query Frame = 2
Query:   71 DITPVVTESSANFIEGLVMDAKQKAATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNAINFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVIN 529
            DI P+++  SA  IE L+ ++  +         R+ +LI+P ++ N+  D  ++  E FGPVLP++++ + EE +   N   +GLQ  VFT DINKA+ I+D++E G + INS+P+   D+ PF G+K SG+G +GI  ++  M + K+ VI+
Sbjct:  312 DIGPLISPESALRIENLIKESVNEGGELLIGGNRQNSLIFPAVI-NIDEDNLLSKIETFGPVLPILKVKNSEEAVSIANNSKYGLQAGVFTNDINKAMKIADSLEYGGIMINSSPTFRKDNMPFGGVKKSGLGREGIKYTVEEMCETKTVVIH 463          
The following BLAST results are available for this feature:
BLAST of FC925522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
GAPN_NICPL7.446e-9193.49NADP-dependent glyceraldehyde-3-phosphate dehydrog... [more]
GAPN_WHEAT3.128e-8992.31NADP-dependent glyceraldehyde-3-phosphate dehydrog... [more]
GAPN_MAIZE6.969e-8992.31NADP-dependent glyceraldehyde-3-phosphate dehydrog... [more]
GAPN_PEA5.900e-8890.53NADP-dependent glyceraldehyde-3-phosphate dehydrog... [more]
GAPN_APIGR4.995e-8789.35NADP-dependent glyceraldehyde-3-phosphate dehydrog... [more]
GAPN_ARATH7.212e-8688.17NADP-dependent glyceraldehyde-3-phosphate dehydrog... [more]
GAPN_STRMU3.065e-4453.42NADP-dependent glyceraldehyde-3-phosphate dehydrog... [more]
GAPN_STREI6.829e-4453.42NADP-dependent glyceraldehyde-3-phosphate dehydrog... [more]
LADH_META32.066e-2436.94Lactaldehyde dehydrogenase OS=Methanococcus aeolic... [more]
LADH_METM77.850e-2437.25Lactaldehyde dehydrogenase OS=Methanococcus maripa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YJ22FM1 TF Citrus clementina cDNA clone KN0AAP3YJ22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925522 ID=FC925522; Name=FC925522; organism=Citrus clementina; type=EST; length=770bp
CGACACTCTTGCGTAGAAAGTAAAAGCTAAAGTTGCTAAACTGACGGTTG
GTGCTCCTGAAGATGATTGCGATATAACCCCGGTTGTTACAGAGTCGTCT
GCTAACTTTATTGAAGGGTTGGTTATGGATGCTAAGCAAAAGGCCGCAAC
ATTTTGTCAGGAGTACAAGAGGGAGGGCAACCTCATATGGCCTTTATTGT
TAGATAATGTCCGACCTGATATGCGGATAGCATGGGAGGAGCCATTTGGT
CCTGTTCTGCCAGTTATTAGGATAAACTCGGTCGAAGAAGGAATCCACCA
TTGTAATGCTATCAACTTTGGTCTTCAGGGATGTGTATTTACTAGGGATA
TAAACAAAGCAATTTTAATCAGTGACGCGATGGAAACAGGAACGGTTCAG
ATTAATTCAGCTCCGTCTCGTGGACCTGATCATTTTCCTTTCCAGGGCTT
AAAGGACAGCGGAATTGGTTCACAGGGAATCACCAATAGCATCAATATGA
TGACGAAAATCAAGAGCACTGTAATCAATTTACCAACCCCGTCTTACACC
GTAGGTTGATGATAATTAATAGGAGCATCGAGCTACACTCACCTTATAGA
GTACATGTTATCTATCTACCTAGAGTATATAACTGGCAAAATAAAATCAC
TGTATGTTATCTTCCTTGCCTTCACGGGCAAGTAATCGGCACTTGCATGT
ACCCACAAGTTGTGGTTATCTTATTGTTTAAATTGGCTCTGGTTATATAA
GTAAAAAAAAAAAAAAAAAA
back to top