FC925523

Overview
NameFC925523
Unique NameFC925523
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length568
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925523 vs. ExPASy Swiss-Prot
Match: SMT1_ARATH (Cycloartenol-C-24-methyltransferase OS=Arabidopsis thaliana GN=SMT1 PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.007e-76
Identity = 135/157 (85.99%), Postives = 148/157 (94.27%), Query Frame = 1
Query:   97 DLASGVGGKIDKTEVLSAVEKYEKYHVCYGGEEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTLHFVKADFMKMPF 567
            DLAS +GGKIDK++VL+AVEKYE+YHV +GG EEERKANYTDMVNKYYDL TSFYE+GWGESFHFA RWKGESL+ESIKRHEHFLALQLG++ GQKVLDVGCGIGGPLREIARFS++ VTGLNNNEYQITRGKELNR AGVDKT +FVKADFMKMPF
Sbjct:    2 DLASNLGGKIDKSDVLTAVEKYEQYHVFHGGNEEERKANYTDMVNKYYDLATSFYEYGWGESFHFAQRWKGESLRESIKRHEHFLALQLGIQPGQKVLDVGCGIGGPLREIARFSNSVVTGLNNNEYQITRGKELNRLAGVDKTCNFVKADFMKMPF 158          
BLAST of FC925523 vs. ExPASy Swiss-Prot
Match: SMT1_ORYSJ (Cycloartenol-C-24-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Smt1-1 PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 1.608e-74
Identity = 134/164 (81.71%), Postives = 145/164 (88.41%), Query Frame = 1
Query:   76 MSKAGAFDLASGVGGKIDKTEVLSAVEKYEKYHVCYGGEEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTLHFVKADFMKMPF 567
            MS++GA DLASG+GGKI K EV SAV++YEKYH  YGG+EE RK+NYTDMVNKYYDL TSFYE+GWGESFHFA RW GESL+ESIKRHEHFLALQLG+K G KVLDVGCGIGGPLREIA+FS  SVTGLNNNEYQITRGKELNR AGV  T  FVKADFMKMPF
Sbjct:    1 MSRSGAMDLASGLGGKITKDEVKSAVDEYEKYHGYYGGKEEARKSNYTDMVNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGVKPGMKVLDVGCGIGGPLREIAKFSLASVTGLNNNEYQITRGKELNRVAGVSGTCDFVKADFMKMPF 164          
BLAST of FC925523 vs. ExPASy Swiss-Prot
Match: SMT1_DICDI (Probable cycloartenol-C-24-methyltransferase 1 OS=Dictyostelium discoideum GN=smt1 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.061e-41
Identity = 78/123 (63.41%), Postives = 92/123 (74.80%), Query Frame = 1
Query:  196 EERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTLHFVKADFMKMP 564
            + RK NYT MVN +YDL T FYEFGWG+SFHFA R K ES + SI RHE ++A QLGL  G KV+D+GCG+GGP+R IARFS  +V GLNNNEYQI RGK LN  AG+     F+KADFM +P
Sbjct:   52 QARKNNYTHMVNTFYDLATDFYEFGWGQSFHFATRHKYESFEASIARHEMYMAHQLGLFPGMKVIDIGCGVGGPMRTIARFSGANVVGLNNNEYQIQRGKRLNESAGLSHLCSFIKADFMHVP 174          
BLAST of FC925523 vs. ExPASy Swiss-Prot
Match: ERG6_YARLI (Sterol 24-C-methyltransferase OS=Yarrowia lipolytica GN=ERG6 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.471e-35
Identity = 63/126 (50.00%), Postives = 90/126 (71.43%), Query Frame = 1
Query:  190 EEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTLHFVKADFMKMPF 567
            +E+ R  +Y  +   YY+LVT FYE+GWG SFHF+  +KGE+ +++  RHEH+LA ++G++ G KVLDVGCG+GGP REIARF+  ++ GLNNN+YQ+ RG   +   G    + +VK DFM+M F
Sbjct:   67 DEQGRIEDYAGLTKHYYNLVTDFYEYGWGSSFHFSRYYKGEAFRQATARHEHYLAYKMGIQPGMKVLDVGCGVGGPAREIARFTGANIVGLNNNDYQVERGTHYSEVQGFGDQVTYVKGDFMQMDF 192          
BLAST of FC925523 vs. ExPASy Swiss-Prot
Match: ERG6_ASHGO (Sterol 24-C-methyltransferase OS=Ashbya gossypii GN=ERG6 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.471e-35
Identity = 68/125 (54.40%), Postives = 88/125 (70.40%), Query Frame = 1
Query:  193 EEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTLHFVKADFMKMPF 567
            EE R A+Y +  + YY++VT FYE+GWG SFHF+  + GES   S+ RHEH+LA + G+ SG  VLDVGCG+GGP REIARF+   V GLNNN+YQI +GK  +R  G+   + +VK DFM M F
Sbjct:   60 EERRLADYNESTHSYYNVVTDFYEYGWGASFHFSRFYTGESFAMSMARHEHYLAHRAGITSGDLVLDVGCGVGGPAREIARFTGCRVVGLNNNDYQIMKGKHYSRKLGLGDQVSYVKGDFMNMDF 184          
BLAST of FC925523 vs. ExPASy Swiss-Prot
Match: ERG6_YEAST (Sterol 24-C-methyltransferase OS=Saccharomyces cerevisiae GN=ERG6 PE=1 SV=4)

HSP 1 Score: 147.517 bits (371), Expect = 4.281e-35
Identity = 67/125 (53.60%), Postives = 87/125 (69.60%), Query Frame = 1
Query:  193 EEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTLHFVKADFMKMPF 567
            EE R  +Y +  + YY++VT FYE+GWG SFHF+  +KGES   SI RHEH+LA + G++ G  VLDVGCG+GGP REIARF+  +V GLNNN+YQI + K   +   +   + FVK DFMKM F
Sbjct:   59 EERRLEDYNEATHSYYNVVTDFYEYGWGSSFHFSRFYKGESFAASIARHEHYLAYKAGIQRGDLVLDVGCGVGGPAREIARFTGCNVIGLNNNDYQIAKAKYYAKKYNLSDQMDFVKGDFMKMDF 183          
BLAST of FC925523 vs. ExPASy Swiss-Prot
Match: ERG6_SCHPO (Sterol 24-C-methyltransferase OS=Schizosaccharomyces pombe GN=SPBC16E9.05 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.303e-35
Identity = 70/142 (49.30%), Postives = 93/142 (65.49%), Query Frame = 1
Query:  154 EKYEKYHVCYGGEEEERKAN----YTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTLHFVKADFMKMPF 567
            E +E +   +  E EE +A     Y  +VN YYDL T  YE+GW +SFHF+  +KGE+  +SI RHEH+LA ++G+K G +VLDVGCG+GGP REI  F+  ++ GLNNN+YQI+R         +DK   FVK DFM MPF
Sbjct:   47 EYFEFWDRNHENESEEDRARRIDGYKSVVNSYYDLATDLYEYGWSQSFHFSRFYKGEAFAQSIARHEHYLAYRMGIKPGSRVLDVGCGVGGPAREITEFTGCNLVGLNNNDYQISRCNNYAVKRNLDKKQVFVKGDFMHMPF 188          
BLAST of FC925523 vs. ExPASy Swiss-Prot
Match: ERG6_DEBHA (Sterol 24-C-methyltransferase OS=Debaryomyces hansenii GN=ERG6 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.775e-34
Identity = 64/126 (50.79%), Postives = 89/126 (70.63%), Query Frame = 1
Query:  190 EEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTLHFVKADFMKMPF 567
            +E++R ++Y+++   YY+LVT FYE+GWG SFHF+  + GE+ +++  RHEHFLA ++ +    KVLDVGCG+GGP REI RF+  S+ GLNNN+YQI R     R   +D  L FVK DFM+M F
Sbjct:   62 DEDKRLSDYSNLTAHYYNLVTDFYEYGWGSSFHFSRYYTGEAFRQATARHEHFLAHKMQINENMKVLDVGCGVGGPAREICRFTDCSIVGLNNNDYQIERANHYARKYKLDDKLSFVKGDFMQMDF 187          
BLAST of FC925523 vs. ExPASy Swiss-Prot
Match: ERG6_CANAL (Sterol 24-C-methyltransferase OS=Candida albicans GN=ERG6 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.624e-34
Identity = 64/126 (50.79%), Postives = 88/126 (69.84%), Query Frame = 1
Query:  190 EEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTLHFVKADFMKMPF 567
            +EE+R  +Y+ + + YY+LVT FYE+GWG SFHF+  +KGE+ +++  RHEHFLA ++ L    KVLDVGCG+GGP REI RF+   + GLNNN+YQI R     +   +D  L +VK DFM+M F
Sbjct:   61 DEEKRLNDYSQLTHHYYNLVTDFYEYGWGSSFHFSRYYKGEAFRQATARHEHFLAHKMNLNENMKVLDVGCGVGGPGREITRFTDCEIVGLNNNDYQIERANHYAKKYHLDHKLSYVKGDFMQMDF 186          
BLAST of FC925523 vs. ExPASy Swiss-Prot
Match: ERG6_KLULA (Sterol 24-C-methyltransferase OS=Kluyveromyces lactis GN=ERG6 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.377e-33
Identity = 68/149 (45.64%), Postives = 95/149 (63.76%), Query Frame = 1
Query:  127 DKTEVLSAVEKYEKYHVCYGGEEEERKA--NYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTLHFVKADFMKMPF 567
            +K+    AV KY K+       + ER+   +Y +  + YY++VT FYE+GWG SFHF+  +KGES   S+ RHEH+LA + G+K    +LDVGCG+GGP R I+RF+  ++ GLNNN+YQI +     +   +D  L FVK DFMKM F
Sbjct:   35 NKSAQTEAVAKYLKHWDGKTDADAERRRLEDYNESTHSYYNVVTDFYEYGWGSSFHFSRFFKGESFSASVARHEHYLAYKAGIKENDLILDVGCGVGGPARTISRFTGCNIIGLNNNDYQIQKANYYAKRDHLDSKLSFVKGDFMKMEF 183          
The following BLAST results are available for this feature:
BLAST of FC925523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
SMT1_ARATH1.007e-7685.99Cycloartenol-C-24-methyltransferase OS=Arabidopsis... [more]
SMT1_ORYSJ1.608e-7481.71Cycloartenol-C-24-methyltransferase 1 OS=Oryza sat... [more]
SMT1_DICDI3.061e-4163.41Probable cycloartenol-C-24-methyltransferase 1 OS=... [more]
ERG6_YARLI1.471e-3550.00Sterol 24-C-methyltransferase OS=Yarrowia lipolyti... [more]
ERG6_ASHGO1.471e-3554.40Sterol 24-C-methyltransferase OS=Ashbya gossypii G... [more]
ERG6_YEAST4.281e-3553.60Sterol 24-C-methyltransferase OS=Saccharomyces cer... [more]
ERG6_SCHPO7.303e-3549.30Sterol 24-C-methyltransferase OS=Schizosaccharomyc... [more]
ERG6_DEBHA2.775e-3450.79Sterol 24-C-methyltransferase OS=Debaryomyces hans... [more]
ERG6_CANAL3.624e-3450.79Sterol 24-C-methyltransferase OS=Candida albicans ... [more]
ERG6_KLULA1.377e-3345.64Sterol 24-C-methyltransferase OS=Kluyveromyces lac... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YJ24FM1 TF Citrus clementina cDNA clone KN0AAP3YJ24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925523 ID=FC925523; Name=FC925523; organism=Citrus clementina; type=EST; length=568bp
CAGAAACACACCTTTTCTCTGTTCCGAATTCTCCTTCTCTTTTTGCGGCT
CTTTCAACATCGGTATATTGCGAGAATGTCGAAGGCTGGAGCTTTTGATT
TGGCTTCTGGAGTGGGCGGAAAGATTGATAAAACCGAAGTGCTCTCCGCC
GTCGAAAAGTATGAGAAGTATCATGTCTGTTATGGAGGTGAAGAGGAAGA
GAGAAAAGCTAACTACACTGACATGGTTAATAAATATTATGATCTTGTTA
CCAGCTTTTATGAGTTTGGCTGGGGGGAGTCATTCCATTTTGCACCAAGA
TGGAAAGGAGAGTCTCTTCAGGAGAGTATCAAGCGACATGAGCACTTCCT
TGCTTTGCAACTTGGCCTTAAATCTGGGCAGAAGGTTTTGGATGTTGGAT
GTGGAATTGGTGGACCCTTGAGAGAAATTGCTCGATTCAGCTCAACATCA
GTTACTGGGTTGAACAACAATGAGTATCAGATAACAAGAGGAAAGGAATT
AAACCGCTTTGCAGGAGTGGACAAGACCCTGCACTTTGTAAAGGCTGACT
TCATGAAAATGCCATTTC
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