FC925525

Overview
NameFC925525
Unique NameFC925525
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925525 vs. ExPASy Swiss-Prot
Match: PATT5_SOLTU (Patatin-T5 OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.252e-42
Identity = 94/190 (49.47%), Postives = 121/190 (63.68%), Query Frame = 2
Query:   32 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLET 598
            G+ +TVLS              L FLE +LQE+D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY EHGPKIF Q S S F             GPKYDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAPT+FPPHY  T
Sbjct:   26 GEMVTVLSIDGGGIKGIIPATILEFLEGQLQEVDNNTDARLADYFDVIGGTSTGGLLTAMITTPNETNRPFAAAKDIVPFYFEHGPKIF-QSSGSIF-------------GPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTFFPPHYFAT 201          
BLAST of FC925525 vs. ExPASy Swiss-Prot
Match: PT3K1_SOLTU (Patatin-3-Kuras 1 OS=Solanum tuberosum GN=pat3-k1 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.014e-41
Identity = 91/190 (47.89%), Postives = 118/190 (62.11%), Query Frame = 2
Query:   32 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLET 598
            G+ +TVLS              L FLE +LQE+D  + AR+ADYFDV+ GT TGGL+T M+T PN+   PF+AAKDI  FY +HGPKIF     S F           L+ PKYDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  +    +A++ DIC ST+AAPTYFPPHY  T
Sbjct:   14 GEMVTVLSIDGGGIKGIIPATILEFLEGQLQEVDNNTDARLADYFDVIGGTGTGGLLTAMITTPNENNRPFAAAKDIIPFYFDHGPKIFEP---SGFH----------LVEPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKTPELDAKMYDICYSTAAAPTYFPPHYFAT 190          

HSP 2 Score: 24.2534 bits (51), Expect = 1.014e-41
Identity = 11/24 (45.83%), Postives = 17/24 (70.83%), Query Frame = 3
Query:  603 DSDSGRTRTFDLVDGGVAANNPTL 674
            ++ +G    F+LVDG VAA +P+L
Sbjct:  191 NTSNGDQYDFNLVDGDVAAVDPSL 214          
BLAST of FC925525 vs. ExPASy Swiss-Prot
Match: PT2K4_SOLTU (Patatin-2-Kuras 4 OS=Solanum tuberosum GN=pat2-k4 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.321e-41
Identity = 93/190 (48.95%), Postives = 119/190 (62.63%), Query Frame = 2
Query:   32 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLET 598
            G+ +TVLS              L FLE +LQE+D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY EHGP IF      N+  SI        LGP YDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  E+   +A++ DIC ST+AAP YFPPHY  T
Sbjct:   14 GEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------NYSGSI--------LGPMYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAESPQLDAKMYDICYSTAAAPIYFPPHYFVT 189          

HSP 2 Score: 21.1718 bits (43), Expect = 1.321e-41
Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  606 SDSGRTRTFDLVDGGVA 656
            + +G    F+LVDGGVA
Sbjct:  191 TSNGDRYEFNLVDGGVA 207          
BLAST of FC925525 vs. ExPASy Swiss-Prot
Match: PAT07_SOLTU (Patatin-07 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.592e-41
Identity = 91/187 (48.66%), Postives = 118/187 (63.10%), Query Frame = 2
Query:   41 ITVLSXXXXXXXXXXXXXXLAFLESKLQELDG-PSARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLET 598
            +TVLS              L FLE +LQE+D    AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY EHGP IF      N+  SI         GP+YDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A+++DIC ST+AAPTYFPPHY  T
Sbjct:   29 VTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------NYSGSI--------FGPRYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMSDICYSTAAAPTYFPPHYFAT 201          
BLAST of FC925525 vs. ExPASy Swiss-Prot
Match: PAT05_SOLTU (Patatin-05 OS=Solanum tuberosum GN=pat1-k1 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.592e-41
Identity = 89/190 (46.84%), Postives = 119/190 (62.63%), Query Frame = 2
Query:   32 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLET 598
            G+ +TVLS              L FLE +LQ++D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY +HGP IF   +   F             GPKYDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A+++DIC ST+AAPTYFPPHY  T
Sbjct:   26 GEMVTVLSIDGGGIKGIIPGIILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFQHGPHIFNSSTGQFF-------------GPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMSDICYSTAAAPTYFPPHYFAT 202          
BLAST of FC925525 vs. ExPASy Swiss-Prot
Match: PAT03_SOLTU (Patatin-03 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.997e-41
Identity = 89/190 (46.84%), Postives = 118/190 (62.11%), Query Frame = 2
Query:   32 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLET 598
            G+ +TVLS              L FLE +LQ++D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY +HGP IF   +   F             GPKYDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++   +   +A+++DIC ST+AAPTYFPPHY  T
Sbjct:   26 GEMVTVLSIDGGGIKGIIPGIILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFQHGPHIFNSSTGQFF-------------GPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLARSPELDAKMSDICYSTAAAPTYFPPHYFAT 202          
BLAST of FC925525 vs. ExPASy Swiss-Prot
Match: PAT13_SOLTU (Patatin-13 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.023e-40
Identity = 89/190 (46.84%), Postives = 118/190 (62.11%), Query Frame = 2
Query:   32 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLET 598
            G+ +TVLS              L FLE +LQ++D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY +HGP IF   +   F             GPKYDGKYL  +  E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A+++DIC ST+AAPTYFPPHY  T
Sbjct:   26 GEMVTVLSVDGGGIKGIIPGIILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFQHGPHIFNSSTGQFF-------------GPKYDGKYLMQVPQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMSDICYSTAAAPTYFPPHYFAT 202          
BLAST of FC925525 vs. ExPASy Swiss-Prot
Match: PAT0_SOLTU (Patatin OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.745e-40
Identity = 91/190 (47.89%), Postives = 118/190 (62.11%), Query Frame = 2
Query:   32 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDG-PSARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLET 598
            G+ +TVLS              L FLE +LQE+D    AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY EHGP IF      N+  SI         GP+YDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  E+   +A++ DIC ST+AAP YFPPH+  T
Sbjct:   26 GEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------NYSGSI--------FGPRYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAESPQLDAKMYDICYSTAAAPIYFPPHHFVT 201          
BLAST of FC925525 vs. ExPASy Swiss-Prot
Match: PATM3_SOLTU (Patatin group M-3 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.863e-40
Identity = 91/187 (48.66%), Postives = 117/187 (62.57%), Query Frame = 2
Query:   41 ITVLSXXXXXXXXXXXXXXLAFLESKLQELDG-PSARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLET 598
            +TVLS              L FLE +LQE+D    AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FYLEHGP IF      N+  SI        +GP YDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAP YFPPHY  T
Sbjct:   29 VTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYLEHGPHIF------NYSGSI--------IGPMYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYFPPHYFIT 201          

HSP 2 Score: 21.1718 bits (43), Expect = 1.863e-40
Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  606 SDSGRTRTFDLVDGGVA 656
            + +G    F+LVDGGVA
Sbjct:  203 TSNGDIYEFNLVDGGVA 219          
BLAST of FC925525 vs. ExPASy Swiss-Prot
Match: PATM2_SOLTU (Patatin group M-2 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.863e-40
Identity = 91/189 (48.15%), Postives = 117/189 (61.90%), Query Frame = 2
Query:   35 KKITVLSXXXXXXXXXXXXXXLAFLESKLQELDG-PSARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLET 598
            K +TVLS              L FLE +LQE+D    AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY EHGP IF      N+  SI        +GP YDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAP YFPPHY  T
Sbjct:   27 KMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------NYSGSI--------IGPMYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYFPPHYFIT 201          

HSP 2 Score: 21.1718 bits (43), Expect = 1.863e-40
Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  606 SDSGRTRTFDLVDGGVA 656
            + +G    F+LVDGGVA
Sbjct:  203 TSNGDIYEFNLVDGGVA 219          
The following BLAST results are available for this feature:
BLAST of FC925525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PATT5_SOLTU9.252e-4249.47Patatin-T5 OS=Solanum tuberosum PE=1 SV=1[more]
PT3K1_SOLTU1.014e-4147.89Patatin-3-Kuras 1 OS=Solanum tuberosum GN=pat3-k1 ... [more]
PT2K4_SOLTU1.321e-4148.95Patatin-2-Kuras 4 OS=Solanum tuberosum GN=pat2-k4 ... [more]
PAT07_SOLTU4.592e-4148.66Patatin-07 OS=Solanum tuberosum PE=2 SV=1[more]
PAT05_SOLTU4.592e-4146.84Patatin-05 OS=Solanum tuberosum GN=pat1-k1 PE=1 SV... [more]
PAT03_SOLTU5.997e-4146.84Patatin-03 OS=Solanum tuberosum PE=2 SV=1[more]
PAT13_SOLTU1.023e-4046.84Patatin-13 OS=Solanum tuberosum PE=2 SV=1[more]
PAT0_SOLTU1.745e-4047.89Patatin OS=Solanum tuberosum PE=3 SV=1[more]
PATM3_SOLTU1.863e-4048.66Patatin group M-3 OS=Solanum tuberosum PE=2 SV=1[more]
PATM2_SOLTU1.863e-4048.15Patatin group M-2 OS=Solanum tuberosum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YL02FM1 TF Citrus clementina cDNA clone KN0AAP8YL02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925525 ID=FC925525; Name=FC925525; organism=Citrus clementina; type=EST; length=701bp
AAATAAAATGCCCTTTGCCGGTTCTGCAGAAGGAAAGAAAATAACAGTTC
TGAGCATCGATGGAGGTGGCATTAGGGGCATTATTCCGGGCACTATTTTA
GCCTTTCTTGAATCCAAGCTCCAGGAATTGGATGGACCAAGTGCAAGAAT
TGCAGATTATTTTGATGTAGTAGCAGGAACAAGCACCGGCGGATTGGTAA
CCACCATGCTTACGGCACCCAACAAGGAAGGCGGACCTTTCAGTGCTGCA
AAGGATATCAATAATTTTTATCTTGAGCACGGTCCTAAAATTTTCCCTCA
AATTAGCCGCAGCAACTTCTTGGAATCGATAGCAAGCTCTATCGATAAAC
TGCTGCTTGGACCAAAGTATGATGGGAAGTACCTGCGGACACTAGTAAAC
GAGCTACTAGGAGACGTTACTGTGAAAGAGACTCTTACCAACGTGGTTAT
ACCAACTTTTGACATCAAGCTTCTTCAACCAGTCATCTTCTCAACCACCG
ATGGAAAAGAGAACGTTTTGAAGAATGCTCGGCTGGCTGATATATGCATA
AGCACTTCTGCAGCGCCCACTTACTTCCCACCTCACTACTTGGAGACCTA
AAGACAGTGACAGTGGCAGAACCCGAACTTTTGATCTTGTTGACGGTGGA
GTTGCTGCTAATAATCCTACCCTATTTGGCAATAACCCACATATCGAAGG
A
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