FC925529

Overview
NameFC925529
Unique NameFC925529
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925529 vs. ExPASy Swiss-Prot
Match: CCD1_PEA (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 1.995e-73
Identity = 116/144 (80.56%), Postives = 128/144 (88.89%), Query Frame = 1
Query:  184 YEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFLLHDEKTGKSSVNVIDAKTMSTDPVAIVQITPRV 615
            YEMRFN+KTG ASQK+LSAS VDFPRVNE YTGRKQRYVYGT LDSIAKVTGIIKFDLHAEPD  KTKLEVGGNV+G++DLGPGRFGSEAV+VPR PGT SEED GYLIF +HDE TGKS V+VIDAK MS +PVA+V++  RV
Sbjct:  378 YEMRFNMKTGEASQKKLSASTVDFPRVNESYTGRKQRYVYGTTLDSIAKVTGIIKFDLHAEPDSGKTKLEVGGNVQGLYDLGPGRFGSEAVYVPRVPGTDSEEDDGYLIFFVHDENTGKSFVHVIDAKRMSAEPVAVVELPQRV 521          

HSP 2 Score: 59.3066 bits (142), Expect = 1.995e-73
Identity = 28/43 (65.12%), Postives = 37/43 (86.05%), Query Frame = 2
Query:    2 DEVLLITCRLDKPDLDMVNGAVKEKLENFSNELWDTCEIFFNL 130
            DE++LITCRL+ P+LD+V GAVKEKL+NFSNEL+   E+ FN+
Sbjct:  345 DEIVLITCRLENPNLDVVGGAVKEKLDNFSNELY---EMRFNM 384          
BLAST of FC925529 vs. ExPASy Swiss-Prot
Match: CCD_CROSA (Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 4.426e-73
Identity = 113/144 (78.47%), Postives = 125/144 (86.81%), Query Frame = 1
Query:  184 YEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFLLHDEKTGKSSVNVIDAKTMSTDPVAIVQITPRV 615
            YEMRFN+KTG ASQK+LS SAVDFPR+NE YT RKQRYVYGTILD+I KV GIIKFDLHAEP+  K KLEVGGNV+GIFDLGPGR+GSEAVFVPRE G  SEED GYLIF +HDE TGKS VNVIDAKTMS +PVA+V++  RV
Sbjct:  382 YEMRFNMKTGAASQKQLSVSAVDFPRINESYTTRKQRYVYGTILDNITKVKGIIKFDLHAEPEAGKKKLEVGGNVQGIFDLGPGRYGSEAVFVPRERGIKSEEDDGYLIFFVHDENTGKSEVNVIDAKTMSAEPVAVVELPNRV 525          

HSP 2 Score: 65.0846 bits (157), Expect = 4.426e-73
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 2
Query:    2 DEVLLITCRLDKPDLDMVNGAVKEKLENFSNELWDTCEIFFNL 130
            DEV+LITCRL+ PDLDMVNGAVKEKLENF NEL+   E+ FN+
Sbjct:  349 DEVVLITCRLENPDLDMVNGAVKEKLENFKNELY---EMRFNM 388          
BLAST of FC925529 vs. ExPASy Swiss-Prot
Match: CCD1_PHAVU (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 9.781e-70
Identity = 111/144 (77.08%), Postives = 125/144 (86.81%), Query Frame = 1
Query:  184 YEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFLLHDEKTGKSSVNVIDAKTMSTDPVAIVQITPRV 615
            YEMRFN+KTG ASQK+LSAS VDFPRVNE YTGRKQRYVYGT LDSIAKVTGIIKFDLHAEPD  K KLEVGGNV+G++DLGPG+FGSEAV++PR PG  SEED GYL+  +HDE  GKS V+VIDAKTMS DPVA+V++  RV
Sbjct:  380 YEMRFNMKTGEASQKKLSASTVDFPRVNENYTGRKQRYVYGTTLDSIAKVTGIIKFDLHAEPDHGKEKLEVGGNVQGLYDLGPGKFGSEAVYIPRVPGIESEEDDGYLVLFVHDENAGKSFVHVIDAKTMSADPVAVVELPNRV 523          

HSP 2 Score: 55.0694 bits (131), Expect = 9.781e-70
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 2
Query:    2 DEVLLITCRLDKPDLDMVNGAVKEKLENFSNELWDTCEIFFNL 130
            DEV+LITCRL  P LD V G V+EKLENFSNEL+   E+ FN+
Sbjct:  347 DEVVLITCRLQNPKLDNVGGTVQEKLENFSNELY---EMRFNM 386          
BLAST of FC925529 vs. ExPASy Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.829e-69
Identity = 108/144 (75.00%), Postives = 126/144 (87.50%), Query Frame = 1
Query:  184 YEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFLLHDEKTGKSSVNVIDAKTMSTDPVAIVQITPRV 615
            YEMRFN+KTG ASQK+LSASAVDFPR+NECYTG+KQRYVYGTILDSIAKVTGIIKFDLHAE +  K  LEVGGN++GI+DLG GR+GSEA++VPRE   ++EED GYLIF +HDE TGKS V VIDAKTMS +PVA+V++  RV
Sbjct:  378 YEMRFNMKTGSASQKKLSASAVDFPRINECYTGKKQRYVYGTILDSIAKVTGIIKFDLHAEAETGKRMLEVGGNIKGIYDLGEGRYGSEAIYVPRE---TAEEDDGYLIFFVHDENTGKSCVTVIDAKTMSAEPVAVVELPHRV 518          

HSP 2 Score: 61.2326 bits (147), Expect = 2.829e-69
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 2
Query:    2 DEVLLITCRLDKPDLDMVNGAVKEKLENFSNELWDTCEIFFNL 130
            DEV+LITCRL+ PDLDMV+G VKEKLENF NEL+   E+ FN+
Sbjct:  345 DEVVLITCRLENPDLDMVSGKVKEKLENFGNELY---EMRFNM 384          
BLAST of FC925529 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.755e-17
Identity = 51/144 (35.42%), Postives = 83/144 (57.64%), Query Frame = 1
Query:  187 EMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGT-SSEEDVGYLIFLLHDEKTGKSSVNVIDAKTMSTDPVAIVQITPRV 615
            +++ +L TG+  +  +SA  +DF  +N  + GR  RYVY  I D + K++G++K D+     ++ T        R ++  G G +G E  FV R+PG   +EED GY++  +HDE TG+S   V+DAK+   + VA V++  RV
Sbjct:  443 KVKIDLVTGIVRRHPISARNLDFAVINPAFLGRCSRYVYAAIGDPMPKISGVVKLDVSKGDRDDCTV------ARRMY--GSGCYGGEPFFVARDPGNPEAEEDDGYVVTYVHDEVTGESKFLVMDAKSPELEIVAAVRLPRRV 578          
BLAST of FC925529 vs. ExPASy Swiss-Prot
Match: ZCD_CROSA (Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplast OS=Crocus sativus GN=ZCD PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.672e-14
Identity = 52/145 (35.86%), Postives = 75/145 (51.72%), Query Frame = 1
Query:  193 RFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIF---DLGPGRFGSEAVFVPREPGTS-SEEDVGYLIFLLHDEKTGKSSVNVIDAKTMSTDPVAIVQITPRV 615
            R  LK+G  S+  LSA  +DF  ++  Y+GRK RY Y  + D + K+ G++K D            E+ G    +    + G G FG E  FVP     S  EED GY++  LHDE  G+SS  V+DA++   + +A V +  RV
Sbjct:  218 RIELKSGSVSRTLLSAENLDFGVIHRGYSGRKSRYAYLGVGDPMPKIRGVVKVD-----------FELAGRGECVVARREFGVGCFGGEPFFVPASSKKSGGEEDDGYVVSYLHDEGKGESSFVVMDARSPELEILAEVVLPRRV 351          
BLAST of FC925529 vs. ExPASy Swiss-Prot
Match: NCED6_ARATH (9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.730e-11
Identity = 48/144 (33.33%), Postives = 71/144 (49.31%), Query Frame = 1
Query:  187 EMRFNLKTGLASQKRLSASA-VDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFLLHDEKTGKSSVNVIDAKTMSTDPVAIVQITPRV 615
            E+R N++T  +++K +     ++   +N  Y GRK ++VY  I D   K +GI K D+      E             F+ GP RFG E  FVP   G   EED GY++  + DE+  +S   V+DA  M    VA V++  RV
Sbjct:  433 EIRLNMRTKESNRKVIVTGVNLEAGHINRSYVGRKSQFVYIAIADPWPKCSGIAKVDIQNGTVSE-------------FNYGPSRFGGEPCFVPEGEG---EEDKGYVMGFVRDEEKDESEFVVVDATDMK--QVAAVRLPERV 558          
BLAST of FC925529 vs. ExPASy Swiss-Prot
Match: NCED1_MAIZE (9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 48/149 (32.21%), Postives = 75/149 (50.34%), Query Frame = 1
Query:  187 EMRFNLKTGLASQKRLSASA----VDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSE--EDVGYLIFLLHDEKTGKSSVNVIDAKTMSTDPVAIVQITPRV 615
            E+R + +TG ++++ +   +    ++   VN    GR+ RY Y  + +   KV+G  K DL      E TK          F+ G GRFG E  FVP +P  +    ED GY++  +HDE+ G S + V++A  M  +  A VQ+  RV
Sbjct:  452 EIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLSTG---ELTK----------FEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHDERAGTSELLVVNAADMRLE--ATVQLPSRV 585          
BLAST of FC925529 vs. ExPASy Swiss-Prot
Match: NCED9_ARATH (9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 48/145 (33.10%), Postives = 74/145 (51.03%), Query Frame = 1
Query:  187 EMRFNLKTGLASQKRLSASAVDFPR--VNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFLLHDEKTGKSSVNVIDAKTMSTDPVAIVQITPRV 615
            E+R NLKTG ++++ + +  V+     VN    GRK RY Y  + +   KV+G  K DL              G +R  +  G G++G E +F+P   G   EED GY++  +HDE+  KS + +I+A  M  +  A V +  RV
Sbjct:  511 EIRLNLKTGESTRRPVISEQVNLEAGMVNRNLLGRKTRYAYLALTEPWPKVSGFAKVDLST------------GEIRK-YIYGEGKYGGEPLFLPSGDG---EEDGGYIMVFVHDEEKVKSELQLINAVNMKLE--ATVTLPSRV 637          
BLAST of FC925529 vs. ExPASy Swiss-Prot
Match: NCED3_ARATH (9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 47/148 (31.76%), Postives = 77/148 (52.03%), Query Frame = 1
Query:  187 EMRFNLKTGLASQKRLSASA-----VDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFLLHDEKTGKSSVNVIDAKTMSTDPVAIVQITPRV 615
            E+R NLKTG ++++ + ++      ++   VN    GRK ++ Y  + +   KV+G  K DL     E K  L            G  R+G E +F+P E G   EED GY++  +HDEKT KS + +++A ++  +  A V++  RV
Sbjct:  451 EIRLNLKTGESTRRPIISNEDQQVNLEAGMVNRNMLGRKTKFAYLALAEPWPKVSGFAKVDLTT--GEVKKHL-----------YGDNRYGGEPLFLPGEGG---EEDEGYILCFVHDEKTWKSELQIVNAVSLEVE--ATVKLPSRV 580          
The following BLAST results are available for this feature:
BLAST of FC925529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CCD1_PEA1.995e-7380.56Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD_CROSA4.426e-7378.47Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Cr... [more]
CCD1_PHAVU9.781e-7077.08Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD1_ARATH2.829e-6975.00Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD4_ARATH2.755e-1735.42Probable carotenoid cleavage dioxygenase 4, chloro... [more]
ZCD_CROSA1.672e-1435.86Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromo... [more]
NCED6_ARATH1.730e-1133.339-cis-epoxycarotenoid dioxygenase NCED6, chloropla... [more]
NCED1_MAIZE3.854e-1132.219-cis-epoxycarotenoid dioxygenase 1, chloroplastic... [more]
NCED9_ARATH6.573e-1133.109-cis-epoxycarotenoid dioxygenase NCED9, chloropla... [more]
NCED3_ARATH8.585e-1131.769-cis-epoxycarotenoid dioxygenase NCED3, chloropla... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YG03FM1 TF Citrus clementina cDNA clone KN0AAP11YG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925529 ID=FC925529; Name=FC925529; organism=Citrus clementina; type=EST; length=617bp
GGATGAAGTGCTTTTGATCACCTGCCGCCTAGACAAGCCGGATCTAGACA
TGGTCAATGGGGCTGTCAAAGAAAAGCTAGAAAATTTCTCAAATGAACTG
TGGGATACCTGTGAAATATTCTTTAATTTGTAGTACTTCTTCCACTGCTA
AGTTTGTTCTGATTGTTTATTTCTATAAGCAGGTATGAGATGAGATTCAA
CTTGAAAACTGGCCTAGCTTCACAAAAGAGATTATCGGCATCCGCTGTTG
ATTTTCCTAGGGTGAATGAGTGCTACACTGGCAGGAAGCAAAGATATGTG
TATGGAACAATACTAGATAGCATTGCAAAAGTCACAGGGATCATCAAATT
TGATCTGCATGCTGAACCAGACGAAGAGAAAACAAAGCTTGAAGTTGGAG
GAAATGTGAGAGGCATCTTTGATCTGGGCCCTGGAAGATTTGGTTCAGAG
GCTGTTTTTGTTCCTAGAGAGCCTGGCACCTCTTCTGAAGAAGATGTTGG
TTACTTAATATTCCTCCTCCATGATGAGAAAACCGGAAAGTCATCCGTGA
ACGTGATTGATGCCAAAACCATGTCCACCGATCCTGTTGCCATTGTCCAA
ATTACCCCAAGGGTTCC
back to top