FC925532

Overview
NameFC925532
Unique NameFC925532
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925532 vs. ExPASy Swiss-Prot
Match: EYA4_MOUSE (Eyes absent homolog 4 OS=Mus musculus GN=Eya4 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.138e-16
Identity = 42/126 (33.33%), Postives = 66/126 (52.38%), Query Frame = 2
Query:  125 DATLTKVFIWDMDETLILLKSLLNGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYDDGRDLSDYEFDRD---------ELCPPFDDLS----LKKIAYRHRAI 463
            D+ L +VF+WD+DET+I+  SLL G++AQ +   KD    V +G   E  I N+ D   F+  +E  +   +D +   D+G+DLS Y F  D          LC P         ++K+A+R+R +
Sbjct:  342 DSDLERVFVWDLDETIIVFHSLLTGSYAQKYG--KDPPMAVTLGLRMEEMIFNLADTHLFFNDLEECDQVHIDDVSSDDNGQDLSTYSFATDGFHAAASSANLCLPTGVRGGVDWMRKLAFRYRRV 465          

HSP 2 Score: 32.7278 bits (73), Expect = 1.138e-16
Identity = 25/82 (30.49%), Postives = 37/82 (45.12%), Query Frame = 1
Query:  511 WDELYDMTDEYTDRWLSSARVLLEQCSSGKEVXXXXXXXXXXXXXXXKSEHVNILVTSGSLIPSLVKCLL------FPLDNL 738
            W +L    +  TD WL++A   L   S+                   +S  VN+LVT+  LIP+L K LL      FP++N+
Sbjct:  488 WLQLRAEIEGLTDSWLTNALKSLSIIST-------------------RSNCVNVLVTTTQLIPALAKVLLYSLGGAFPIENI 550          
BLAST of FC925532 vs. ExPASy Swiss-Prot
Match: EYA4_HUMAN (Eyes absent homolog 4 OS=Homo sapiens GN=EYA4 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.478e-16
Identity = 42/126 (33.33%), Postives = 66/126 (52.38%), Query Frame = 2
Query:  125 DATLTKVFIWDMDETLILLKSLLNGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYDDGRDLSDYEFDRD---------ELCPPFDDLS----LKKIAYRHRAI 463
            D+ L +VF+WD+DET+I+  SLL G++AQ +   KD    V +G   E  I N+ D   F+  +E  +   +D +   D+G+DLS Y F  D          LC P         ++K+A+R+R +
Sbjct:  365 DSDLERVFVWDLDETIIVFHSLLTGSYAQKYG--KDPPMAVTLGLRMEEMIFNLADTHLFFNDLEECDQVHIDDVSSDDNGQDLSTYSFATDGFHAAASSANLCLPTGVRGGVDWMRKLAFRYRRV 488          

HSP 2 Score: 32.3426 bits (72), Expect = 1.478e-16
Identity = 24/82 (29.27%), Postives = 37/82 (45.12%), Query Frame = 1
Query:  511 WDELYDMTDEYTDRWLSSARVLLEQCSSGKEVXXXXXXXXXXXXXXXKSEHVNILVTSGSLIPSLVKCLL------FPLDNL 738
            W +L    +  TD WL++A   L   S+                   +S  +N+LVT+  LIP+L K LL      FP++N+
Sbjct:  511 WLQLRAEIEGLTDSWLTNALKSLSIIST-------------------RSNCINVLVTTTQLIPALAKVLLYSLGGAFPIENI 573          
BLAST of FC925532 vs. ExPASy Swiss-Prot
Match: EYA2_MOUSE (Eyes absent homolog 2 OS=Mus musculus GN=Eya2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.601e-13
Identity = 43/126 (34.13%), Postives = 65/126 (51.59%), Query Frame = 2
Query:  125 DATLTKVFIWDMDETLILLKSLLNGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYDDGRDLSDYEFDRDELCPPFDDLSL-------------KKIAYRHRAI 463
            D  + +VF+WD+DET+I+  SLL GTFA  +   KD    V+IG M E  I N+ D   F+  +E+ +   +D +   D+G+DLS Y F  D         SL             +K+A+R+R +
Sbjct:  258 DNEIERVFVWDLDETIIIFHSLLTGTFASRYG--KDTTTSVRIGLMMEEMIFNLADTHLFFNDLEDCDQIHVDDVSSDDNGQDLSTYNFSTDGFHSTAPGASLCLGTGVHGGVDWMRKLAFRYRRV 381          
BLAST of FC925532 vs. ExPASy Swiss-Prot
Match: EYA2_HUMAN (Eyes absent homolog 2 OS=Homo sapiens GN=EYA2 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.397e-13
Identity = 44/126 (34.92%), Postives = 67/126 (53.17%), Query Frame = 2
Query:  125 DATLTKVFIWDMDETLILLKSLLNGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYDDGRDLSDYEFDRD--ELCPPFDDLSL-----------KKIAYRHRAI 463
            D  + +VF+WD+DET+I+  SLL GTFA  +   KD    V+IG M E  I N+ D   F+  +E+ +   +D +   D+G+DLS Y F  D      P  +L L           +K+A+R+R +
Sbjct:  264 DNEIERVFVWDLDETIIIFHSLLTGTFASRYG--KDTTTSVRIGLMMEEMIFNLADTHLFFNDLEDCDQIHVDDVSSDDNGQDLSTYNFSADGFHSSAPGANLCLGSGVHGGVDWMRKLAFRYRRV 387          
BLAST of FC925532 vs. ExPASy Swiss-Prot
Match: EYA2_BOVIN (Eyes absent homolog 2 OS=Bos taurus GN=EYA2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.397e-13
Identity = 44/126 (34.92%), Postives = 67/126 (53.17%), Query Frame = 2
Query:  125 DATLTKVFIWDMDETLILLKSLLNGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYDDGRDLSDYEFDRD--ELCPPFDDLSL-----------KKIAYRHRAI 463
            D  + +VF+WD+DET+I+  SLL GTFA  +   KD    V+IG M E  I N+ D   F+  +E+ +   +D +   D+G+DLS Y F  D      P  +L L           +K+A+R+R +
Sbjct:  263 DNEIERVFVWDLDETIIIFHSLLTGTFASRYG--KDTTASVRIGLMMEEMIFNLADTHLFFNDLEDCDQIHVDDVSSDDNGQDLSTYNFSADGFHSSAPGANLCLGSGVHGGVDWMRKLAFRYRRV 386          
BLAST of FC925532 vs. ExPASy Swiss-Prot
Match: EYA3_HUMAN (Eyes absent homolog 3 OS=Homo sapiens GN=EYA3 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.435e-11
Identity = 39/111 (35.14%), Postives = 59/111 (53.15%), Query Frame = 2
Query:   86 ENCEEKEKRKRGMDAT------LTKVFIWDMDETLILLKSLLNGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYDDGRDLSDYEFDRD 400
            +N   K + KR  DAT      L +VF+WD+DET+I+  SLL G++AQ +   KD    +  G   E  I  V D   F+  +E  +   ++ +   D+G+DLS+Y F  D
Sbjct:  280 KNMTSKNRGKRKADATSSQDSELERVFLWDLDETIIIFHSLLTGSYAQKYG--KDPTVVIGSGLTMEEMIFEVADTHLFFNDLEECDQVHVEDVASDDNGQDLSNYSFSTD 388          
BLAST of FC925532 vs. ExPASy Swiss-Prot
Match: EYA1_HUMAN (Eyes absent homolog 1 OS=Homo sapiens GN=EYA1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.435e-11
Identity = 34/92 (36.96%), Postives = 52/92 (56.52%), Query Frame = 2
Query:  125 DATLTKVFIWDMDETLILLKSLLNGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYDDGRDLSDYEFDRD 400
            D+ L +VFIWD+DET+I+  SLL G++A  +   +D    V +G   E  I N+ D   F+  +E  +   +D +   D+G+DLS Y F  D
Sbjct:  318 DSDLERVFIWDLDETIIVFHSLLTGSYANRYG--RDPPTSVSLGLRMEEMIFNLADTHLFFNDLEECDQVHIDDVSSDDNGQDLSTYNFGTD 407          
BLAST of FC925532 vs. ExPASy Swiss-Prot
Match: EYA3_MOUSE (Eyes absent homolog 3 OS=Mus musculus GN=Eya3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.180e-11
Identity = 36/111 (32.43%), Postives = 58/111 (52.25%), Query Frame = 2
Query:   68 KHIDVGENCEEKEKRKRGMDATLTKVFIWDMDETLILLKSLLNGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYDDGRDLSDYEFDRD 400
            K++ V    + K       D+ L +VF+WD+DET+I+  SLL G++AQ +   KD    +  G   E  I  V D   F+  +E  +   ++ +   D+G+DLS+Y F  D
Sbjct:  217 KNMTVKNRGKRKADASSSQDSELERVFLWDLDETIIIFHSLLTGSYAQKYG--KDPTAVIGSGLTMEEMIFEVADTHLFFNDLEECDQVHVEDVASDDNGQDLSNYSFSTD 325          
BLAST of FC925532 vs. ExPASy Swiss-Prot
Match: EYA1_MOUSE (Eyes absent homolog 1 OS=Mus musculus GN=Eya1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 33/92 (35.87%), Postives = 52/92 (56.52%), Query Frame = 2
Query:  125 DATLTKVFIWDMDETLILLKSLLNGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYDDGRDLSDYEFDRD 400
            D+ L +V +WD+DET+I+  SLL G++A  +   +D    V +G   E  I N+ D   F+  +E  +   +D +   D+G+DLS Y F RD
Sbjct:  317 DSDLERVLLWDLDETIIVFHSLLTGSYANRYG--RDPPTSVSLGLRMEEMIFNLADTHLFFNDLEECDQVHIDDVSSDDNGQDLSTYNFGRD 406          
The following BLAST results are available for this feature:
BLAST of FC925532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
EYA4_MOUSE1.138e-1633.33Eyes absent homolog 4 OS=Mus musculus GN=Eya4 PE=2... [more]
EYA4_HUMAN1.478e-1633.33Eyes absent homolog 4 OS=Homo sapiens GN=EYA4 PE=1... [more]
EYA2_MOUSE2.601e-1334.13Eyes absent homolog 2 OS=Mus musculus GN=Eya2 PE=1... [more]
EYA2_HUMAN3.397e-1334.92Eyes absent homolog 2 OS=Homo sapiens GN=EYA2 PE=1... [more]
EYA2_BOVIN3.397e-1334.92Eyes absent homolog 2 OS=Bos taurus GN=EYA2 PE=2 S... [more]
EYA3_HUMAN2.435e-1135.14Eyes absent homolog 3 OS=Homo sapiens GN=EYA3 PE=1... [more]
EYA1_HUMAN2.435e-1136.96Eyes absent homolog 1 OS=Homo sapiens GN=EYA1 PE=1... [more]
EYA3_MOUSE3.180e-1132.43Eyes absent homolog 3 OS=Mus musculus GN=Eya3 PE=1... [more]
EYA1_MOUSE4.153e-1135.87Eyes absent homolog 1 OS=Mus musculus GN=Eya1 PE=1... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YL06FM1 TF Citrus clementina cDNA clone KN0AAP8YL06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925532 ID=FC925532; Name=FC925532; organism=Citrus clementina; type=EST; length=741bp
AATTTGCTAAACCCTAGCGTGTGGTCTTGGGATCCCTTGCTTACATCCCC
ACTGCTAACTCCATAATAAGCATATCGACGTGGGTGAGAACTGTGAGGAA
AAGGAGAAAAGAAAACGAGGCATGGATGCAACACTAACAAAAGTATTTAT
ATGGGACATGGACGAGACCCTTATTCTTCTCAAGTCTTTGTTGAATGGAA
CATTTGCCCAGTCTTTCAATGACTTAAAAGATGCTGACAAAGGTGTTCAA
ATTGGAAGAATGTGGGAGAATCACATTCTTAATGTTTGTGATGAATGCTT
CTTCTATGAGCAAATTGAGAACAACAATACGCCTTTTCTTGATGCCTTAA
AGCAATATGACGATGGCCGAGATCTTTCTGATTATGAATTTGATCGTGAT
GAGTTATGTCCTCCATTTGATGATCTCAGCTTAAAGAAAATTGCCTACAG
GCACCGTGCCATTGCCCATAAGGCTTGCAAAATATCTTTGATAAAGAGCT
GTTGAGAGTCTGGGATGAATTGTACGATATGACTGATGAATATACTGATA
GATGGCTGTCCTCGGCAAGGGTCTTATTGGAGCAGTGTTCAAGTGGGAAG
GAAGTCTCAACTTCTTCTCTTGGTTTGGCCAGTCTTGATTCTGCCGATAC
AAAATCCGAGCATGTAAATATTTTGGTGACTTCTGGGTCATTGATACCTA
GCCTTGTAAAATGCTTACTCTTTCCGCTCGACAATTTGATA
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