FC925533

Overview
NameFC925533
Unique NameFC925533
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925533 vs. ExPASy Swiss-Prot
Match: SAR1A_ARATH (GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 8.360e-76
Identity = 147/187 (78.61%), Postives = 154/187 (82.35%), Query Frame = 1
Query:   67 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYPLGLTNFTTGKGKVNLVDSNVRPP*GIHVQHCP--PKMGYRKG 621
            MF+ DWFYG+LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESK+ELDALLSDESLA+VPFLILGNKIDIPYAASEDELRY LGL+NFTTGKGKVNL DSNVRP   + V  C    KMGY +G
Sbjct:    1 MFMIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLASVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNLTDSNVRP---LEVFMCSIVRKMGYGEG 184          
BLAST of FC925533 vs. ExPASy Swiss-Prot
Match: SAR1B_ARATH (GTP-binding protein SAR1B OS=Arabidopsis thaliana GN=SAR1B PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 1.862e-75
Identity = 149/187 (79.68%), Postives = 152/187 (81.28%), Query Frame = 1
Query:   67 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYPLGLTNFTTGKGKVNLVDSNVRPP*GIHVQHCP--PKMGYRKG 621
            MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESKRELDALLSDE+LA VPFLILGNKIDIPYAASEDELRY LGLTNFTTGKGKV L DS VRP   + V  C    KMGY +G
Sbjct:    1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKRELDALLSDEALATVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVTLGDSGVRP---LEVFMCSIVRKMGYGEG 184          
BLAST of FC925533 vs. ExPASy Swiss-Prot
Match: SAR1A_BRACM (GTP-binding protein SAR1A OS=Brassica campestris GN=SAR1A PE=2 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.207e-74
Identity = 146/187 (78.07%), Postives = 153/187 (81.82%), Query Frame = 1
Query:   67 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYPLGLTNFTTGKGKVNLVDSNVRPP*GIHVQHCP--PKMGYRKG 621
            MF+ DWFYG+LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESK+ELDALLSDESLA VPFLILGNKIDIPYAASEDELRY LGL+NFTTGKGKV+LV SNVRP   + V  C    KMGY +G
Sbjct:    1 MFVIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVDLVGSNVRP---LEVFMCSIVRKMGYGEG 184          
BLAST of FC925533 vs. ExPASy Swiss-Prot
Match: SAR1B_BRACM (GTP-binding protein SAR1B OS=Brassica campestris GN=SAR1B PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 7.324e-72
Identity = 144/189 (76.19%), Postives = 150/189 (79.37%), Query Frame = 1
Query:   67 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYPLGLTNFTTGKGKVNLV--DSNVRPP*GIHVQHCP--PKMGYRKG 621
            MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW                   ERF+ESK+ELDALLSD++LA VPFLILGNKID PYAASEDELRY LGLTNFTTGKGKV     DS VRP   + V  C    KMGY +G
Sbjct:    1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFSESKKELDALLSDDALATVPFLILGNKIDNPYAASEDELRYHLGLTNFTTGKGKVTTAGGDSGVRP---LEVFMCSIVRKMGYGEG 186          
BLAST of FC925533 vs. ExPASy Swiss-Prot
Match: SAR2_SOLLC (GTP-binding protein SAR2 OS=Solanum lycopersicum GN=SAR2 PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.356e-70
Identity = 138/187 (73.80%), Postives = 146/187 (78.07%), Query Frame = 1
Query:   67 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYPLGLTNFTTGKGKVNLVDSNVRPP*GIHVQHCP--PKMGYRKG 621
            MFL DWFYG+LASLGLWQK+AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIG IKFKAFDLGGHQIARRVW                   ERF E+K+ELD LLSDESL NVPFLILGNKIDIPYAASEDELRY LGLT  TTGKG +NL  +NVRP   I V  C    KMGY +G
Sbjct:    1 MFLVDWFYGVLASLGLWQKDAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGNIKFKAFDLGGHQIARRVWRDYYAKVDAVVYLVDANDRERFPEAKKELDGLLSDESLTNVPFLILGNKIDIPYAASEDELRYHLGLTGVTTGKGNINLAGTNVRP---IEVFMCSIVRKMGYGEG 184          
BLAST of FC925533 vs. ExPASy Swiss-Prot
Match: SAR1_TOBAC (GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.935e-52
Identity = 119/192 (61.98%), Postives = 131/192 (68.23%), Query Frame = 1
Query:   67 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGN---KIDIPYAA-SEDELRYPLGLTNFT-TGKGKVNLVDSNVRPP*GIHVQHCP--PKMGYRKG 621
            MFL DWFYGILA+LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESK+ELDALLS  S     FL L N   +I+ P     +   RY +G    +   +GKVNL DSNVRP   + V  C    +MGY +G
Sbjct:    1 MFLVDWFYGILATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDSFDKERFAESKKELDALLSGWSSLAHCFLFLDNWVTRIEHPICCLRKMNWRYHMGANGASPLARGKVNLADSNVRP---VEVFMCSIVRQMGYGEG 189          
BLAST of FC925533 vs. ExPASy Swiss-Prot
Match: SAR1_ASPFU (Small COPII coat GTPase sar1 OS=Aspergillus fumigatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 8.711e-49
Identity = 112/188 (59.57%), Postives = 126/188 (67.02%), Query Frame = 1
Query:   67 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYPLGLTNFTTGKGKVNLVDSNVRPP*GIHVQHCPPKM--GYRKGI 624
            M++ +WFY ILASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT HPTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK ELDALL+ E LA VPFLILGNKID P A SEDELR+ LGL   TTGKGKV L    +RP   I V  C   M  GY +GI
Sbjct:    1 MWIINWFYDILASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRP---IEVFMCSVVMRQGYGEGI 182          
BLAST of FC925533 vs. ExPASy Swiss-Prot
Match: SAR1_NEOFI (Small COPII coat GTPase sar1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sar1 PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.138e-48
Identity = 111/188 (59.04%), Postives = 126/188 (67.02%), Query Frame = 1
Query:   67 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYPLGLTNFTTGKGKVNLVDSNVRPP*GIHVQHCPPKM--GYRKGI 624
            M++ +WFY +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT HPTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK ELDALL+ E LA VPFLILGNKID P A SEDELR+ LGL   TTGKGKV L    +RP   I V  C   M  GY +GI
Sbjct:    1 MWIINWFYDVLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRP---IEVFMCSVVMRQGYGEGI 182          
BLAST of FC925533 vs. ExPASy Swiss-Prot
Match: SAR1_USTMA (Small COPII coat GTPase SAR1 OS=Ustilago maydis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.486e-48
Identity = 109/187 (58.29%), Postives = 128/187 (68.45%), Query Frame = 1
Query:   67 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYPLGLTNFTTGKGKVNLVDSNVRPP*GIHVQHCPPKM--GYRKG 621
            MF+ +WF+ ILA LGL  K AKILFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG++KF  +DLGGHQ ARR+W                   ERFAE++ ELDALLS E L++VPFLILGNKID P A SE+ELR  +GL   TTGKGKV L D  +RP   I +  C   M  GY +G
Sbjct:    1 MFIINWFWDILAQLGLAHKNAKILFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGQVKFTTYDLGGHQQARRLWKDYFPEVDGIVFLVDTQDHERFAEARAELDALLSIEELSSVPFLILGNKIDAPGAVSEEELRQAIGLYQ-TTGKGKVPLKD--IRP---IEIFMCSVVMRQGYGEG 181          
BLAST of FC925533 vs. ExPASy Swiss-Prot
Match: SAR1_ASPTN (Small COPII coat GTPase sar1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sar1 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.486e-48
Identity = 112/188 (59.57%), Postives = 126/188 (67.02%), Query Frame = 1
Query:   67 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYPLGLTNFTTGKGKVNLVDSNVRPP*GIHVQHCPPKM--GYRKGI 624
            M++ +WFY ILASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT HPTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK ELDALL+ E LA VPFLILGNKID P A SEDELR+ LGL   TTGKGKV L    +RP   I V  C   M  GY +GI
Sbjct:    1 MWIINWFYDILASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDYERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRP---IEVFMCSVVMRQGYGEGI 182          
The following BLAST results are available for this feature:
BLAST of FC925533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
SAR1A_ARATH8.360e-7678.61GTP-binding protein SAR1A OS=Arabidopsis thaliana ... [more]
SAR1B_ARATH1.862e-7579.68GTP-binding protein SAR1B OS=Arabidopsis thaliana ... [more]
SAR1A_BRACM1.207e-7478.07GTP-binding protein SAR1A OS=Brassica campestris G... [more]
SAR1B_BRACM7.324e-7276.19GTP-binding protein SAR1B OS=Brassica campestris G... [more]
SAR2_SOLLC2.356e-7073.80GTP-binding protein SAR2 OS=Solanum lycopersicum G... [more]
SAR1_TOBAC4.935e-5261.98GTP-binding protein SAR1 OS=Nicotiana tabacum GN=S... [more]
SAR1_ASPFU8.711e-4959.57Small COPII coat GTPase sar1 OS=Aspergillus fumiga... [more]
SAR1_NEOFI1.138e-4859.04Small COPII coat GTPase sar1 OS=Neosartorya fische... [more]
SAR1_USTMA1.486e-4858.29Small COPII coat GTPase SAR1 OS=Ustilago maydis GN... [more]
SAR1_ASPTN1.486e-4859.57Small COPII coat GTPase sar1 OS=Aspergillus terreu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YG05FM1 TF Citrus clementina cDNA clone KN0AAP11YG05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925533 ID=FC925533; Name=FC925533; organism=Citrus clementina; type=EST; length=644bp
TTATTTCAGCCAAAATTCGATCTTTTTGATAGATTCATTATAAATAAGGA
GTAATAAAAGAAACCCATGTTTTTGTTTGATTGGTTTTATGGGATTCTTG
CATCTCTTGGGCTCTGGCAAAAAGAGGCCAAGATCTTGTTTCTCGGCCTC
GATAATGCCGGTAAAACGACGCTGCTTCATATGTTGAAAGATGAGAGATT
AGTGCAACATCAACCAACACAACATCCCACTTCGGAGGAACTGAGTATTG
GGAAAATCAAGTTTAAGGCTTTTGATTTGGGAGGGCATCAGATTGCTCGT
AGAGTTTGGAAAGATTACTACGCCAAGGTTGATGCGGTTGTGTACCTGGT
AGATGCGTATGACAAGGAGAGGTTTGCTGAGTCGAAAAGGGAGCTTGATG
CCCTTCTTTCAGATGAATCCTTGGCCAATGTTCCATTCCTTATTTTGGGC
AACAAAATTGATATCCCATATGCTGCGTCAGAAGATGAGTTGCGATACCC
CCTTGGACTGACCAACTTCACCACTGGCAAGGGTAAGGTGAATCTGGTTG
ATTCCAACGTTCGCCCCCCTTGAGGTATTCATGTGCAACATTGTCCCCCC
AAAATGGGTTACCGGAAAGGGATTTAAGTGGCTGTCTCAGTACC
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