FC925542

Overview
NameFC925542
Unique NameFC925542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length527
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925542 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.612e-35
Identity = 68/78 (87.18%), Postives = 73/78 (93.59%), Query Frame = 1
Query:    7 VLPSLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 240
            VL  LPIGFAVFMVHLATIP+TGTGINPARSLGAAVIYNKDK WDD W+FWVGP +GAAIAAFYHQ+ILRAGA+KALG
Sbjct:  207 VLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNKDKPWDDHWIFWVGPLVGAAIAAFYHQYILRAGAIKALG 284          
BLAST of FC925542 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.750e-35
Identity = 68/78 (87.18%), Postives = 73/78 (93.59%), Query Frame = 1
Query:    7 VLPSLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 240
            VL  LPIGFAVF+VHLATIPITGTGINPARSLGAA+IYNKDKAWD  W+FWVGPF GAAIAAFYHQF+LRAGA+KALG
Sbjct:  201 VLAPLPIGFAVFIVHLATIPITGTGINPARSLGAAIIYNKDKAWDHHWIFWVGPFAGAAIAAFYHQFVLRAGAIKALG 278          
BLAST of FC925542 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.750e-35
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 1
Query:    7 VLPSLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 240
            VL  LPIGFAVFMVHLATIP+TGTGINPARSLGAAV+YNKDK WDD W+FWVGP +GAAIAAFYHQ+ILRAGA+KALG
Sbjct:  209 VLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNKDKPWDDHWIFWVGPLLGAAIAAFYHQYILRAGAIKALG 286          
BLAST of FC925542 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.126e-35
Identity = 67/80 (83.75%), Postives = 73/80 (91.25%), Query Frame = 1
Query:    1 LKVLPSLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 240
            + VL  LPIGF+VFMVHLATIPITGTGINPARS GAAVIYN  KAWDDQW+FWVGPF+GAAIAAFYHQF+LRAGA+KA G
Sbjct:  199 IPVLAPLPIGFSVFMVHLATIPITGTGINPARSFGAAVIYNNQKAWDDQWIFWVGPFVGAAIAAFYHQFVLRAGAMKAYG 278          
BLAST of FC925542 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.782e-34
Identity = 68/78 (87.18%), Postives = 71/78 (91.03%), Query Frame = 1
Query:    7 VLPSLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 240
            VL  LPIGFAVFMVHLATIPITGTGINPARS GAAVIYN +KAWDDQW+FWVGP IGAA AAFYHQFILRA A+KALG
Sbjct:  202 VLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPMIGAAAAAFYHQFILRAAAIKALG 279          
BLAST of FC925542 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 8.846e-34
Identity = 65/78 (83.33%), Postives = 73/78 (93.59%), Query Frame = 1
Query:    7 VLPSLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 240
            VL  LPIGFAVFMVHLATIPITGTGINPARS+GAAVI+N +KAW + W+FWVGPF+GAAIAAFYHQ+ILRAGA+KALG
Sbjct:  207 VLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIFNNEKAWHNHWIFWVGPFVGAAIAAFYHQYILRAGAIKALG 284          
BLAST of FC925542 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.971e-33
Identity = 66/78 (84.62%), Postives = 69/78 (88.46%), Query Frame = 1
Query:    7 VLPSLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 240
            VL  LPIGFAVFMVHLATIPITGTGINPARS GAAVIYNK K WDD W+FWVGPFIGAAIAAFYHQF+LRA   K+LG
Sbjct:  200 VLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKSLG 277          
BLAST of FC925542 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.971e-33
Identity = 66/78 (84.62%), Postives = 69/78 (88.46%), Query Frame = 1
Query:    7 VLPSLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 240
            VL  LPIGFAVFMVHLATIPITGTGINPARS GAAVIYNK K WDD W+FWVGPFIGAAIAAFYHQF+LRA   K+LG
Sbjct:  202 VLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKSLG 279          
BLAST of FC925542 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 3.361e-33
Identity = 65/80 (81.25%), Postives = 71/80 (88.75%), Query Frame = 1
Query:    1 LKVLPSLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 240
            + VL  LPIGFAVFMVHLATIPITGTGINPARS GAAVIYN +KAWDDQW+FWVGPF+GA  AA YHQ+ILRA A+KALG
Sbjct:  193 IPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFLGALAAAAYHQYILRASAIKALG 272          
BLAST of FC925542 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.361e-33
Identity = 66/75 (88.00%), Postives = 69/75 (92.00%), Query Frame = 1
Query:    7 VLPSLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVK 231
            VL  LPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQW+FWVGP IGAAIAA YHQ++LRA A K
Sbjct:  206 VLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASATK 280          
The following BLAST results are available for this feature:
BLAST of FC925542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
PIP21_MAIZE1.612e-3587.18Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP25_ARATH2.750e-3587.18Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
PIP22_MAIZE2.750e-3585.90Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP26_ARATH6.126e-3583.75Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP24_ARATH1.782e-3487.18Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP21_ORYSJ8.846e-3483.33Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP22_ARATH1.971e-3384.62Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP21_ARATH1.971e-3384.62Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
PIP27_ARATH3.361e-3381.25Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP24_MAIZE3.361e-3388.00Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YL11FM1 TF Citrus clementina cDNA clone KN0AAP8YL11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925542 ID=FC925542; Name=FC925542; organism=Citrus clementina; type=EST; length=527bp
CTCAAGGTTTTGCCTTCGCTCCCCATTGGATTTGCTGTGTTCATGGTACA
CTTGGCCACAATCCCAATCACTGGCACTGGCATTAACCCAGCAAGGAGTC
TCGGGGCCGCTGTTATTTACAACAAGGACAAGGCTTGGGATGATCAATGG
CTCTTCTGGGTTGGACCCTTCATCGGTGCAGCAATTGCGGCTTTCTACCA
CCAATTCATCTTGAGAGCTGGAGCTGTCAAGGCTCTTGGTTCATTCAGGA
GCCAATCCCGTGTCTGATTTTAGTTTCGACAAGTGGATTATCCACATCTT
CATGGGGTTAATGATTTAAAATTGGAAAGAAAAAACTGGGAAGGAGTAGA
GGTGTGTTAAGTTTCAAAAAGTGAATAATGAGGGGGGGTGTGATTTGTGC
TTTCAAGGAGTTGTAGGCAAAAAGTCTCTTAGACAATGAGGGGGCTTGCT
TTCTTGTAATCCCCTCTGTTGTTTTCAAGCACTTTCCTTAGAATTCACTT
CTTCAATGTTTCTGTCTCTTTCCACAT
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