FC925543

Overview
NameFC925543
Unique NameFC925543
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925543 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 38/80 (47.50%), Postives = 49/80 (61.25%), Query Frame = 3
Query:  222 RKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQDG----DEASDKSKSEVNDEDE 449
            RKT+K+++PN                 ++ AEKAP+ SKAEK K EY K + AYNKKQ      +E SDKS+SEVND+DE
Sbjct:   51 RKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAGAAEEEESDKSRSEVNDDDE 130          
BLAST of FC925543 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 39/82 (47.56%), Postives = 46/82 (56.10%), Query Frame = 3
Query:  222 RKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQ------DGDEASDKSKSEVNDEDE 449
            RK F KE+P                 +MS AEKAPY +K+EK K EY K M AYNKKQ        +E S+KS SEVNDED+
Sbjct:   59 RKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVSEVNDEDD 140          
BLAST of FC925543 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 38/93 (40.86%), Postives = 50/93 (53.76%), Query Frame = 3
Query:  222 RKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKKMNAYNK--------------KQDGDEASDKSKSEVNDEDEASG 458
            RK FK++NP                 S+S ++KAPY +KA KLK EY K + AYNK              +++ +E SDKSKSEVNDED+  G
Sbjct:   56 RKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEVNDEDDEEG 148          
The following BLAST results are available for this feature:
BLAST of FC925543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
HMGL_IPONI5.996e-1247.50HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
HMGL_SOYBN5.076e-1147.56HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
MNB1B_MAIZE8.658e-1140.86DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YG10FM1 TF Citrus clementina cDNA clone KN0AAP11YG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925543 ID=FC925543; Name=FC925543; organism=Citrus clementina; type=EST; length=712bp
TTGTCTAGTTCCCTTGAAGGGTGCGAAGGGTAAAGGTGCAGCTAGAGTCT
CACAGGAAGCTTTGAAGCCAAATGACAGAAAGGTTGGTAAGCGGAAAGCT
GCTACTGCTAAGCTTGACAGTGGCAGTAAAAGGCAAGGAAAGAGGGAGAA
GAAGGCCAAGAAAGACCCAAATAAACCAAAGAGGCCTCCTAGTGCTTTTT
TTTGTCTTCCTTGAGGAGTTCAGGAAAACCTTCAAGAAAGAGAATCCCAA
TGTAACTGCTGTTTCAGCTGTTGGGAAAGCGGCAGGAGGGAAGTGGAAAT
CTATGTCTCCTGCTGAAAAAGCTCCATATGAAAGCAAAGCAGAAAAACTG
AAGTCTGAGTATGGAAAGAAAATGAATGCCTACAATAAAAAGCAGGACGG
TGATGAGGCATCAGACAAGTCAAAGTCAGAAGTGAATGATGAAGATGAAG
CTAGTGGGGAGGAAGAACATCAGCTGGAGCCGGAGCCGGAGCCCGAGCCA
GAGCAAGAGCAGGATGAGGATGAGGATGAGGAAGTGGAAGAAGATGAAGA
TGACGAAGAAGATGATGATGACTGAAATCTGATGATAATGCCTAGGATAC
AAAGGAACAAATTTTGGATTTTGGAATATTAATACCCTTAAAGGGTTTAG
ATTTGGTGGCTTTGGAAAGAAGATGACGTAGACGCCAGCCTTTTTGATGC
CATCATGGTCTT
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