FC925546

Overview
NameFC925546
Unique NameFC925546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925546 vs. ExPASy Swiss-Prot
Match: GEM1_USTMA (Mitochondrial Rho GTPase 1 OS=Ustilago maydis GN=GEM1 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.377e-46
Identity = 91/188 (48.40%), Postives = 126/188 (67.02%), Query Frame = 3
Query:  183 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR-GDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCRQALKRIFIICDHDMDG 743
            KS+LI +   E+   KV  V  P  LPP+  P+ V   I+DTSSS E++  L  EL+RA+ + + Y+ +  S+  R+ +YWLP +R L + VP+I+ G K+DLR GD    +LE+ + P+M +F+E+ETCVECSA   + V +VFY+AQKAVL+PTAPL+D  E  LKP C  ALKRIF +CD D DG
Sbjct:   17 KSTLITSLVKEAYVAKVQKVVPPITLPPEVAPEAVVTKIVDTSSSPEHRANLEAELRRANVICIVYSISAPSSFDRIPTYWLPYIRSLGVNVPVILVGNKIDLRSGDVTNAALEDELAPVMAEFKEVETCVECSARIPLNVSEVFYFAQKAVLYPTAPLYDSREHVLKPACVDALKRIFRLCDSDKDG 204          
BLAST of FC925546 vs. ExPASy Swiss-Prot
Match: GEM1_CRYNE (Mitochondrial Rho GTPase 1 OS=Cryptococcus neoformans GN=GEM1 PE=3 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 7.819e-42
Identity = 87/188 (46.28%), Postives = 118/188 (62.77%), Query Frame = 3
Query:  183 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS-LEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCRQALKRIFIICDHDMDG 743
            KSS+I +   E+    VP V     +PP+  P+    +I+DTSS+  ++  L   + RA  + L Y+    S+  R++ YWLP  RR  I VP+I+ G K+DLRG       LE+   PIM++F+E+ET VECSA   + V +VFY+AQKAVLHPTAPL+D  E TLKP+C +ALKRIF I D D DG
Sbjct:   19 KSSIITSLIKEAFVTNVPHVVPEVTIPPEITPENFTTSIVDTSSNPRSRPHLLSSISRAHVICLVYSIADPSSFDRVAEYWLPLFRREGINVPVILVGNKIDLRGGRVTNQGLEDESAPIMREFKEVETVVECSALLPLNVSEVFYFAQKAVLHPTAPLYDSREHTLKPKCLEALKRIFTISDVDKDG 206          
BLAST of FC925546 vs. ExPASy Swiss-Prot
Match: MIRO2_PIG (Mitochondrial Rho GTPase 2 OS=Sus scrofa GN=RHOT2 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.850e-38
Identity = 83/189 (43.92%), Postives = 121/189 (64.02%), Query Frame = 3
Query:  183 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELR---RLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCRQALKRIFIICDHDMD 740
            K+SLI +   E  PE+VPP      +P D  P++VP  I+D S + +   +L +E+++A  V + Y  ++++T+ ++ + W+P +    R   +VPII+ G K DLR      S+E V+ PIM QF EIETCVECSA  +  + ++FYYAQKAVLHPTAPL+D + + L+P C QAL RIF + D DMD
Sbjct:   17 KTSLILSLVGEEFPEEVPPRAEEITIPADVTPEKVPTHIVDYSEAEQTAEELQDEIQKASVVCVVYDVSEETTVEKIRTKWIPLVNGGTRRGPRVPIILVGNKSDLRP---GGSMEAVL-PIMSQFPEIETCVECSAKNLKNISELFYYAQKAVLHPTAPLYDPEAKQLRPACAQALTRIFRLSDQDMD 201          
BLAST of FC925546 vs. ExPASy Swiss-Prot
Match: MIRO2_HUMAN (Mitochondrial Rho GTPase 2 OS=Homo sapiens GN=RHOT2 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 6.850e-38
Identity = 82/189 (43.39%), Postives = 122/189 (64.55%), Query Frame = 3
Query:  183 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI---KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCRQALKRIFIICDHDMD 740
            K+SLI +   E  PE+VPP      +P D  P++VP  I+D S + +   +L EE+ +A+ V + Y  ++++T+ ++ + W+P +        +VPII+ G K DLR   + +S+E V+ PIM QF EIETCVECSA  +  + ++FYYAQKAVLHPTAPL+D + + L+P C QAL RIF + D D+D
Sbjct:   17 KTSLILSLVGEEFPEEVPPRAEEITIPADVTPEKVPTHIVDYSEAEQTDEELREEIHKANVVCVVYDVSEEATIEKIRTKWIPLVNGGTTQGPRVPIILVGNKSDLR---SGSSMEAVL-PIMSQFPEIETCVECSAKNLRNISELFYYAQKAVLHPTAPLYDPEAKQLRPACAQALTRIFRLSDQDLD 201          
BLAST of FC925546 vs. ExPASy Swiss-Prot
Match: MIRO2_CHICK (Mitochondrial Rho GTPase 2 OS=Gallus gallus GN=RHOT2 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.526e-37
Identity = 81/187 (43.32%), Postives = 118/187 (63.10%), Query Frame = 3
Query:  183 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELR---RLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCRQALKRIFIICDHD 734
            K+SLI A   E  PE+VPP      +P D  P++VP  I+D S S + + +L EE+ +A+ V + Y   +++T+ ++ + W+P +        ++PII+ G K DL+      S  EV+ PIM QF EIETCVECSA  +  + ++FYYAQKAVLHPTAPL+D +E+ L+P C +AL RIF + D D
Sbjct:   17 KTSLIMALVGEEFPEEVPPRAEEITIPADVTPEKVPTHIVDYSESEQTEDELQEEIAKANVVCVVYDVTKEATIEKIRTKWIPMVNGGAEKGARIPIILVGNKSDLQ----MGSSMEVILPIMNQFSEIETCVECSAKNLKNISELFYYAQKAVLHPTAPLYDPEEKQLRPACSRALTRIFNLSDQD 199          
BLAST of FC925546 vs. ExPASy Swiss-Prot
Match: MIRO1_MOUSE (Mitochondrial Rho GTPase 1 OS=Mus musculus GN=Rhot1 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.799e-37
Identity = 79/190 (41.58%), Postives = 123/190 (64.74%), Query Frame = 3
Query:  183 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCRQALKRIFIICDHDMDG 743
            K+SLI +  +E  PE+VPP      +P D  P+RVP  I+D S + ++  +L++E+ +A+ + + YA N + ++ +++S W+P   E    + ++P+I+ G K DL      +S+E ++ PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +E+ +KP C +AL RIF I D D DG
Sbjct:   30 KTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDLV---EYSSMETIL-PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRIFKISDQDNDG 215          
BLAST of FC925546 vs. ExPASy Swiss-Prot
Match: MIRO1_HUMAN (Mitochondrial Rho GTPase 1 OS=Homo sapiens GN=RHOT1 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 5.799e-37
Identity = 79/190 (41.58%), Postives = 123/190 (64.74%), Query Frame = 3
Query:  183 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCRQALKRIFIICDHDMDG 743
            K+SLI +  +E  PE+VPP      +P D  P+RVP  I+D S + ++  +L++E+ +A+ + + YA N + ++ +++S W+P   E    + ++P+I+ G K DL      +S+E ++ PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +E+ +KP C +AL RIF I D D DG
Sbjct:   17 KTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDLV---EYSSMETIL-PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRIFKISDQDNDG 202          
BLAST of FC925546 vs. ExPASy Swiss-Prot
Match: MIRO1_DANRE (Mitochondrial Rho GTPase 1-A OS=Danio rerio GN=rhot1a PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.799e-37
Identity = 79/190 (41.58%), Postives = 125/190 (65.79%), Query Frame = 3
Query:  183 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCRQALKRIFIICDHDMDG 743
            K+SLI +  +E  P++VPP      +P D  P+RVP  I+D S + ++  +L +E+ +A+ + + Y+ N + ++ +++S+W+P   E    + +VP+I+ G K DL  +H+  S+E ++ PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +E+ +KP C +AL RIF I D D DG
Sbjct:   17 KTSLIMSLVSEEFPDEVPPRAEEITIPADVTPERVPTHIVDYSEAEQSDEQLYQEITKANVICIVYSVNNKKSIEKVTSHWIPLINERTDKDSRVPLILVGNKSDLV-EHS--SMETIL-PIMNQYSEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYSPEEKEMKPSCIKALTRIFKISDLDNDG 202          
BLAST of FC925546 vs. ExPASy Swiss-Prot
Match: MIRO1_BOVIN (Mitochondrial Rho GTPase 1 OS=Bos taurus GN=RHOT1 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.799e-37
Identity = 79/190 (41.58%), Postives = 123/190 (64.74%), Query Frame = 3
Query:  183 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCRQALKRIFIICDHDMDG 743
            K+SLI +  +E  PE+VPP      +P D  P+RVP  I+D S + ++  +L++E+ +A+ + + YA N + ++ +++S W+P   E    + ++P+I+ G K DL      +S+E ++ PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +E+ +KP C +AL RIF I D D DG
Sbjct:   30 KTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDLV---EYSSMETIL-PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRIFKISDQDNDG 215          
BLAST of FC925546 vs. ExPASy Swiss-Prot
Match: MIRO2_BOVIN (Mitochondrial Rho GTPase 2 OS=Bos taurus GN=RHOT2 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.687e-36
Identity = 82/189 (43.39%), Postives = 119/189 (62.96%), Query Frame = 3
Query:  183 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELR---RLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCRQALKRIFIICDHDMD 740
            K+SLI +   E  PE+VP       +P D  P++VP  I+D S + +   +L  E+ +AD V + Y  ++++T+ ++ + W+P +    +   +VPII+ G K DLR      S+E V+ PIM QF EIETCVECSA  +  + ++FYYAQKAVLHPTAPL+D + + L+P C QAL RIF + D DMD
Sbjct:   17 KTSLILSLVGEEFPEEVPARAEEITIPADVTPEKVPTHIVDYSETEQTVEELQGEIDKADVVCVVYDVSEEATVEKIRTKWIPLVNGDTKRGPRVPIILVGNKSDLRP---GGSMEAVL-PIMSQFPEIETCVECSAKNLKNISELFYYAQKAVLHPTAPLYDPEAKQLRPACAQALTRIFRLSDQDMD 201          
The following BLAST results are available for this feature:
BLAST of FC925546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
GEM1_USTMA1.377e-4648.40Mitochondrial Rho GTPase 1 OS=Ustilago maydis GN=G... [more]
GEM1_CRYNE7.819e-4246.28Mitochondrial Rho GTPase 1 OS=Cryptococcus neoform... [more]
MIRO2_PIG6.850e-3843.92Mitochondrial Rho GTPase 2 OS=Sus scrofa GN=RHOT2 ... [more]
MIRO2_HUMAN6.850e-3843.39Mitochondrial Rho GTPase 2 OS=Homo sapiens GN=RHOT... [more]
MIRO2_CHICK1.526e-3743.32Mitochondrial Rho GTPase 2 OS=Gallus gallus GN=RHO... [more]
MIRO1_MOUSE5.799e-3741.58Mitochondrial Rho GTPase 1 OS=Mus musculus GN=Rhot... [more]
MIRO1_HUMAN5.799e-3741.58Mitochondrial Rho GTPase 1 OS=Homo sapiens GN=RHOT... [more]
MIRO1_DANRE5.799e-3741.58Mitochondrial Rho GTPase 1-A OS=Danio rerio GN=rho... [more]
MIRO1_BOVIN5.799e-3741.58Mitochondrial Rho GTPase 1 OS=Bos taurus GN=RHOT1 ... [more]
MIRO2_BOVIN1.687e-3643.39Mitochondrial Rho GTPase 2 OS=Bos taurus GN=RHOT2 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YG11FM1 TF Citrus clementina cDNA clone KN0AAP11YG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925546 ID=FC925546; Name=FC925546; organism=Citrus clementina; type=EST; length=745bp
AACACTATTTATTTTCTCTCACCGATCTCATTAAAAGCGGAAACCCCTCT
TACTAATATTATTTTCCGTCTCGCTCTCTCTCTCTCTCCCTCATAATTTA
AAATAAATCAATGCCTGGTGGTTCAGGCTCCAGTAGCCGAACCGGCGTGA
GAGTGGTGGTTGTTGGCGATCGAGGCACTGGAAAATCGAGTCTGATAGCG
GCGGCCGCAACCGAGTCGGTCCCTGAGAAGGTCCCACCGGTCCACGCTCC
TACGCGCCTGCCGCCCGATTTTTATCCCGATCGTGTCCCCGTCACTATCA
TTGACACCTCTTCCAGCTTGGAGAATAAAGGTAAGCTTAATGAAGAATTG
AAGCGAGCAGATGCTGTGGTGTTAACATATGCATGTAATCAGCAATCAAC
TCTTTCTCGTTTGAGTTCCTATTGGCTCCCAGAGCTTCGTCGTTTAGAGA
TTAAGGTGCCCATAATTGTAGCTGGGTGTAAGCTAGATCTGCGCGGTGAT
CATAATGCCACAAGCCTCGAGGAGGTTATGGGACCAATCATGCAACAGTT
CAGGGAGATTGAAACTTGTGTAGAATGTTCTGCAACTACTATGATTCAGG
TCCCTGATGTTTTCTATTATGCTCAAAAAGCAGTACTTCATCCAACAGCT
CCATTGTTTGATCACGATGAACAAACTTTGAAACCTCGGTGCCGTCAGGC
ATTGAAAAGGATATTTATTATCTGTGATCATGACATGGACGGTGC
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