FC925560

Overview
NameFC925560
Unique NameFC925560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925560 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 3.529e-93
Identity = 173/195 (88.72%), Postives = 178/195 (91.28%), Query Frame = 2
Query:   77 MAAMTSTAFPPSVSSTTNKLFDSSFHGAPMSPSLLRLPPIKSSRPNNLSISASASPPYDLNTFKFDPSKQSIASREMTPTYMTDMITYADTDXXXXGAGSAGLSCAYELNKNPNIQIAIIQQSATPGGGPWLGGQLFSAMVVPKPSHIFLDELGIHYDEQDTYVVIKHAALFTSTIMSKLLARPNVKLFNAVPAE 661
            MAAM STAF PSVSSTTNKLFDSSFHGAPMSPSLLRL PIKSSRPNNLSISASASPPYDLNTFKFDP K+SI SREMT  YMTDMITYADTD    GAGSAGLSCAYEL+KNPNIQIAII+QS +PGGG WLGGQLFSAMVV KP+HIFLDELGI YDEQD YVVIKHAALFTSTIMSKLLARPNVKLFNAV AE
Sbjct:    1 MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAE 195          
BLAST of FC925560 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 8.193e-66
Identity = 127/193 (65.80%), Postives = 150/193 (77.72%), Query Frame = 2
Query:   83 AMTSTAFPPSVSSTTNKLFDSSFHGAPMSPSLLRLPPIKSSRPNNLSISASASPPYDLNTFKFDPSKQSIASREMTPTYMTDMITYADTDXXXXGAGSAGLSCAYELNKNPNIQIAIIQQSATPGGGPWLGGQLFSAMVVPKPSHIFLDELGIHYDEQDTYVVIKHAALFTSTIMSKLLARPNVKLFNAVPAE 661
            A T T+ P  ++   N    SSF+G P++PS +R+ P K+    ++S+S + SPPYDL  F FDP K+SI SREMT  YM DMITYADTD    GAGS+GL C YEL+KNP++Q+AII+QS +PGGG WLGGQLFS MVV KP+H+FLDELGI YDEQD YVVIKHAALFTSTIMSKLLARPNVKLFNAV AE
Sbjct:    2 ASTLTSKPQRLALFENSA--SSFYGTPLAPSSIRVQPTKAGAKPSISMSGAPSPPYDLKAFTFDPIKESIVSREMTRRYMMDMITYADTDVVVVGAGSSGLVC-YELSKNPSVQVAIIEQSVSPGGGAWLGGQLFSGMVVRKPAHLFLDELGIEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAE 191          
BLAST of FC925560 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.113e-65
Identity = 129/196 (65.82%), Postives = 156/196 (79.59%), Query Frame = 2
Query:   77 MAAMTSTAFPPSVSSTT-NKLFDSSFHGAPMSPSLLRLPPIKSSRPNNLSISASASPPYDLNTFKFDPSKQSIASREMTPTYMTDMITYADTDXXXXGAGSAGLSCAYELNKNPNIQIAIIQQSATPGGGPWLGGQLFSAMVVPKPSHIFLDELGIHYDEQDTYVVIKHAALFTSTIMSKLLARPNVKLFNAVPAE 661
            MAA+ ST    S+SST   +LFDSSFHG+ +S + + +      +P + S+ A+ +  YDLN F FDP K+SI SREMT  YMTDMITYA+TD    GAGSAGLS AYE++KNPN+Q+AII+QS +PGGG WLGGQLFSAM+V KP+H+FLDE+G+ YDEQDTYVV+KHAALFTSTIMSKLLARPNVKLFNAV AE
Sbjct:    1 MAAIASTL---SLSSTKPQRLFDSSFHGSAISAAPISI----GLKPRSFSVRATTAG-YDLNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAE 188          
BLAST of FC925560 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.073e-57
Identity = 118/193 (61.14%), Postives = 141/193 (73.06%), Query Frame = 2
Query:  116 SSTTNKLFDSSFHGAPMSPSLLRLPPIK----------SSRPNNLSISASAS-PPYDLNTFKFDPSKQSIASREMTPTYMTDMITYADTDXXXXGAGSAGLSCAYELNKNPNIQIAIIQQSATPGGGPWLGGQLFSAMVVPKPSHIFLDELGIHYDEQDTYVVIKHAALFTSTIMSKLLARPNVKLFNAVPAE 661
            ++  + L  SSF G+ + P+  R  P             + P   S+S S+S PPYDL +F+F P K+SI SREMT  YMTDMITYADTD    GAGSAGLSCAYEL+K+P + IAI++QS +PGGG WLGGQLFSAMVV KP+H+FLDELG+ YDE + YVVIKHAALFTST+MS LLARPNVKLFNAV  E
Sbjct:    3 TAAASSLLKSSFAGSRL-PAATRTTPASLVVATGPRGAGAGPICASMSMSSSNPPYDLTSFRFSPIKESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKDPAVSIAIVEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVAYDEAEDYVVIKHAALFTSTVMSLLLARPNVKLFNAVAVE 194          
BLAST of FC925560 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.829e-57
Identity = 115/191 (60.21%), Postives = 140/191 (73.30%), Query Frame = 2
Query:  116 SSTTNKLFDSSFHGAPMSPSLLRLP---------PIKSSRPNNLSISASASPPYDLNTFKFDPSKQSIASREMTPTYMTDMITYADTDXXXXGAGSAGLSCAYELNKNPNIQIAIIQQSATPGGGPWLGGQLFSAMVVPKPSHIFLDELGIHYDEQDTYVVIKHAALFTSTIMSKLLARPNVKLFNAVPAE 661
            ++  + L  SSF G+ + PS  R           P     P   SIS S +PPYDL +F+F P K+SI SREMT  YMTDMIT+ADTD    GAGSAGLSCAYEL+K+P + +AI++QS +PGGG WLGGQLFSAMVV +P+H+FLDELG+ YDE + YVV+KHAALFTST+MS+LLARPNVKLFNAV  E
Sbjct:    3 TTAASSLLKSSFAGSRL-PSATRTTTPSSVAVATPRAGGGPIRASIS-SPNPPYDLTSFRFSPIKESIVSREMTRRYMTDMITHADTDVVIVGAGSAGLSCAYELSKDPTVSVAIVEQSVSPGGGAWLGGQLFSAMVVRRPAHLFLDELGVGYDEAEDYVVVKHAALFTSTVMSRLLARPNVKLFNAVAVE 191          
BLAST of FC925560 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.115e-38
Identity = 79/146 (54.11%), Postives = 107/146 (73.29%), Query Frame = 2
Query:  230 ASASPPYDLN-TFKFDPSKQSIASREMTPTYMTDMITYADTDXXXXGAGSAGLSCAYELN-KNPNIQIAIIQQSATPGGGPWLGGQLFSAMVVPKPSHIFLDELGIHYDEQDTYVVIKHAALFTSTIMSKLLARPNVKLFNAVPAE 661
            + A P Y L+ +F F P ++S  SR MT  Y +D+  YA++D    GAGSAGL+ AY +  + P+++IAII+ S  PGGG WLGGQLFSAMVV KP+ +FL+E+G+ Y+++  YVV+KHAALFTST+M++ LA PNVKLFNA   E
Sbjct:   37 SKAYPTYSLDESFSFAPIRESTVSRAMTRRYFSDLDKYAESDIVIVGAGSAGLTAAYYIGTRRPDLKIAIIEASVAPGGGAWLGGQLFSAMVVRKPADLFLNEIGVPYEDEGDYVVVKHAALFTSTVMARTLALPNVKLFNATAVE 182          
BLAST of FC925560 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.746e-37
Identity = 77/134 (57.46%), Postives = 98/134 (73.13%), Query Frame = 2
Query:  263 FKFDPSKQSIASREMTPTYMTDMITYADTDXXXXGAGSAGLSCAYELNKN-PNIQIAIIQQSATPGGGPWLGGQLFSAMVVPKPSHIFLDELGIHYDEQDTYVVIKHAALFTSTIMSKLLARPNVKLFNAVPAE 661
            FKF P ++S  SR MT  Y  D+  YA++D    GAGS GLS AY L K  P+++IAII+ S +PGGG WLGGQLFSAM++ KP+  FL E+G+ Y+++  YVV+KHAALFTSTIMSK+L  PN+KLFNA   E
Sbjct:   44 FKFAPIRESQVSRAMTRRYFQDLDNYAESDIVIIGAGSCGLSAAYILGKKRPDLKIAIIEASVSPGGGAWLGGQLFSAMIMRKPADAFLREVGVPYEDEGNYVVVKHAALFTSTIMSKVLQMPNIKLFNATCVE 177          
BLAST of FC925560 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.991e-37
Identity = 76/138 (55.07%), Postives = 99/138 (71.74%), Query Frame = 2
Query:  251 DLNTFKFDPSKQSIASREMTPTYMTDMITYADTDXXXXGAGSAGLSCAYELNKN-PNIQIAIIQQSATPGGGPWLGGQLFSAMVVPKPSHIFLDELGIHYDEQDTYVVIKHAALFTSTIMSKLLARPNVKLFNAVPAE 661
            D + FKF P ++S  SR MT  Y  D+  +A +D    GAGS+GLS AY + KN P++++ II+ S  PGGG WLGGQLFSAMV+ KP+H+FL EL I Y+++  YVV+KHAALF ST++SK+L  PNVKLFNA   E
Sbjct:   34 DWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVE 171          
BLAST of FC925560 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.991e-37
Identity = 87/181 (48.07%), Postives = 114/181 (62.98%), Query Frame = 2
Query:  164 MSPSLLRLPPIKSSR---------PNNLSISASASPPYD-----LNTFKFDPSKQSIASREMTPTYMTDMITYADTDXXXXGAGSAGLSCAYELNKN-PNIQIAIIQQSATPGGGPWLGGQLFSAMVVPKPSHIFLDELGIHYDEQDTYVVIKHAALFTSTIMSKLLARPNVKLFNAVPAE 661
            MSP     PP +S+          P  LS +++A+   +      + FKF P ++S  SR MT  Y  D+  YA++D    GAGS GLS  Y L K  P+++IAII+ S +PGGG WLGGQLFSAMV+ KP+  FL E+G+ Y+++  YVV+KHAALFTSTIMSK+L  PN KLFNA   E
Sbjct:    1 MSPPAAVSPPARSAELASAPAVKLPVGLSKNSAAATTVEEMEGKWDDFKFAPIRESQVSRAMTRRYFQDLDNYAESDIVIVGAGSCGLSTRYILGKKRPDLKIAIIEASVSPGGGAWLGGQLFSAMVMRKPADAFLREVGVPYEDEGNYVVVKHAALFTSTIMSKVLQLPNCKLFNATCVE 181          
BLAST of FC925560 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.037e-36
Identity = 77/136 (56.62%), Postives = 100/136 (73.53%), Query Frame = 2
Query:  263 FKFDPSKQSIASREMTPTYMTDMITYADTDXXXXGAGSAGLSCAYELNK-NPNIQIAIIQQSATPGGGPWLGGQLFSAMVVPKPSHIFLDELGIHYDE--QDTYVVIKHAALFTSTIMSKLLARPNVKLFNAVPAE 661
            FKF P ++S  SR MT  Y  D+  YA++D    GAGS GLS AY L K  P+++IAI++ S +PGGG WLGGQLFSAMV+ +P+ +FL+ELG+ Y+E     YVV+KHA+LFTST+MSK+L+ PNVKLFNA   E
Sbjct:   48 FKFAPIRESQVSRAMTRRYFEDLDKYAESDVVIVGAGSCGLSTAYVLAKARPDLKIAIVEASVSPGGGAWLGGQLFSAMVMRRPAEVFLNELGVPYEEDANPNYVVVKHASLFTSTLMSKVLSFPNVKLFNATAVE 183          
The following BLAST results are available for this feature:
BLAST of FC925560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
THI4_CITSI3.529e-9388.72Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL8.193e-6665.80Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH3.113e-6565.82Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE1.073e-5761.14Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE1.829e-5760.21Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI2_SCHPO1.115e-3854.11Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]
THI4_FUSOX2.746e-3757.46Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_YEAST7.991e-3755.07Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]
THI4_FUSSH7.991e-3748.07Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_ASPOR3.037e-3656.62Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YG16FM1 TF Citrus clementina cDNA clone KN0AAP11YG16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925560 ID=FC925560; Name=FC925560; organism=Citrus clementina; type=EST; length=662bp
CACTGCTGCAAATCTTTTTACTTCTCATTATCAAACTTCTAAGCAGCAGG
GGAAGGAGGGGTTAAAAAAAAAAAACATGGCAGCCATGACTTCCACAGCT
TTCCCTCCTTCAGTTTCCTCCACCACCAATAAGCTCTTTGACTCATCCTT
TCATGGGGCTCCCATGTCACCTTCTCTTCTACGTCTTCCACCCATCAAAT
CTTCCCGTCCCAACAACTTGTCCATTTCTGCTTCTGCTTCTCCTCCTTAT
GACTTGAACACTTTCAAGTTTGACCCCAGCAAACAATCCATTGCTTCTCG
TGAAATGACACCCACGTACATGACGGACATGATCACTTATGCTGACACTG
ATGTGGTAGTGGTTGGTGCTGGCTCTGCTGGCCTCTCTTGTGCTTATGAG
CTCAACAAAAACCCCAACATTCAGATTGCTATTATCCAACAGTCTGCTAC
CCCCGGCGGTGGCCCGTGGCTCGGTGGACAGCTCTTCTCGGCCATGGTTG
TGCCCAAACCATCCCACATCTTCCTTGACGAGCTTGGCATCCACTACGAT
GAGCAAGACACCTATGTTGTGATCAAGCATGCAGCGCTGTTCACCTCCAC
TATAATGAGCAAGCTCCTGGCCCGCCCCAACGTCAAGCTCTTTAATGCAG
TGCCAGCCGAGG
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