FC925568

Overview
NameFC925568
Unique NameFC925568
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925568 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.720e-50
Identity = 90/108 (83.33%), Postives = 100/108 (92.59%), Query Frame = 2
Query:    2 VPVPYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQFR 325
            VPV YRRVPC RRGGIRFTINGHSYFNLVLITNVGGAGDVH+ +IKGSRT WQ MSRNWGQNWQSN+YLNGQ+LSF+VTTSDGRTV S+N APAGWS+G+T++G QFR
Sbjct:  142 VPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAAIKGSRTVWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGWSYGQTFAGGQFR 249          
BLAST of FC925568 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.539e-50
Identity = 90/108 (83.33%), Postives = 99/108 (91.67%), Query Frame = 2
Query:    2 VPVPYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQFR 325
            VPV YRRVPC RRGGIRFTINGHSYFNLVLITNVGGAGDVH+  +KGSRTGWQ MSRNWGQNWQSN+YLNGQSLSF+VTTSDG+T+ S NVA AGWSFG+T++GAQ R
Sbjct:  143 VPVAYRRVPCVRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAMVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAGWSFGQTFTGAQLR 250          
BLAST of FC925568 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.103e-48
Identity = 87/108 (80.56%), Postives = 97/108 (89.81%), Query Frame = 2
Query:    2 VPVPYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQFR 325
            VPV YRRVPC RRGGIRFTINGHSYFNLVL+TNVGGAGDVH+V++KGSRT WQ MSRNWGQNWQSN  LNGQ+LSF+VT SDGRTV S N+APA WSFG+T++G QFR
Sbjct:  146 VPVSYRRVPCMRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASWSFGQTFTGRQFR 253          
BLAST of FC925568 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 2.325e-47
Identity = 85/107 (79.44%), Postives = 94/107 (87.85%), Query Frame = 2
Query:    2 VPVPYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQF 322
            VPV YRRVPC ++GGIRFTINGHSYFNLVL+TNV G GDV +VSIKGS TGWQPMSRNWGQNWQSN+YL+GQSLSF+V  SDGRTVTS NV PAGW FG+T+ G QF
Sbjct:  145 VPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGPGDVQSVSIKGSSTGWQPMSRNWGQNWQSNSYLDGQSLSFQVAVSDGRTVTSNNVVPAGWQFGQTFEGGQF 251          
BLAST of FC925568 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.966e-47
Identity = 87/108 (80.56%), Postives = 96/108 (88.89%), Query Frame = 2
Query:    2 VPVPYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQFR 325
            +PV YRRV C R GGIRFTINGHSYFNLVL+TNVGGAGDVH+VS+KGSRT WQ MSRNWGQNWQSN+YLNGQSLSF VTTSD R+V S+NVAP  WSFG+TY+G QFR
Sbjct:  147 IPVMYRRVRCKRSGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSMKGSRTKWQLMSRNWGQNWQSNSYLNGQSLSFVVTTSDRRSVVSFNVAPPTWSFGQTYTGGQFR 254          
BLAST of FC925568 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.836e-47
Identity = 83/107 (77.57%), Postives = 95/107 (88.79%), Query Frame = 2
Query:    2 VPVPYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQF 322
            VPV +RRVPC ++GG+RFT+NGHSYFNLVL+TNV GAGDV +VSIKGSRTGWQPMSRNWGQNWQSN +L+GQSLSF+VT SDGRTVTS NVA  GW FG+T+ G QF
Sbjct:  140 VPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGWQFGQTFEGGQF 246          
BLAST of FC925568 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.836e-47
Identity = 83/107 (77.57%), Postives = 95/107 (88.79%), Query Frame = 2
Query:    2 VPVPYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQF 322
            VPV +RRVPC ++GG+RFT+NGHSYFNLVL+TNV GAGDV +VSIKGSRTGWQPMSRNWGQNWQSN +L+GQSLSF+VT SDGRTVTS NVA  GW FG+T+ G QF
Sbjct:  140 VPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGWQFGQTFEGGQF 246          
BLAST of FC925568 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.666e-45
Identity = 84/108 (77.78%), Postives = 96/108 (88.89%), Query Frame = 2
Query:    2 VPVPYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRT-GWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQF 322
            VPV +RRVPC ++GGIRFTINGHSYFNLVLI+NVGGAGDVHAVSIKGS+T  WQ MSRNWGQNWQSN+Y+N QSLSF+VTTSDGRT+ S +VAP+ W FG+TY G QF
Sbjct:  146 VPVSFRRVPCMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNWGQNWQSNSYMNDQSLSFQVTTSDGRTLVSNDVAPSNWQFGQTYQGGQF 253          
BLAST of FC925568 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.144e-44
Identity = 83/108 (76.85%), Postives = 91/108 (84.26%), Query Frame = 2
Query:    2 VPVPYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQFR 325
            VPV YRRV C R+GGIRFTINGHSYFNLVLITNV GAGDV +VSIKG+ T WQ MSRNWGQNWQSN  L+GQ+LSF+VTTSDGRTV S N  P  WSFG+TY+G QFR
Sbjct:  145 VPVQYRRVACRRKGGIRFTINGHSYFNLVLITNVAGAGDVISVSIKGTNTRWQSMSRNWGQNWQSNAKLDGQALSFKVTTSDGRTVISNNATPRNWSFGQTYTGKQFR 252          
BLAST of FC925568 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 9.144e-44
Identity = 81/107 (75.70%), Postives = 91/107 (85.05%), Query Frame = 2
Query:    2 VPVPYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQF 322
            VPV YRRV C ++GGIRFTI GHSYFNLVL+TNVGGAGDV AVS+KGSR+GWQ MS NWG NWQ+   L+GQ LSF VT SDGRTVTS NVAP+GWSFG+T+SG QF
Sbjct:  142 VPVQYRRVACAKQGGIRFTITGHSYFNLVLVTNVGGAGDVTAVSVKGSRSGWQAMSHNWGANWQNGANLDGQPLSFRVTASDGRTVTSDNVAPSGWSFGQTFSGGQF 248          
The following BLAST results are available for this feature:
BLAST of FC925568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
EXP10_ARATH1.720e-5083.33Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXPA1_ARATH8.539e-5083.33Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXP15_ARATH2.103e-4880.56Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXPA2_ORYSJ2.325e-4779.44Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA5_ARATH3.966e-4780.56Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXPA4_ORYSJ8.836e-4777.57Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI8.836e-4777.57Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXPA8_ARATH1.666e-4577.78Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXP14_ARATH9.144e-4476.85Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXP11_ORYSJ9.144e-4475.70Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YG20FM1 TF Citrus clementina cDNA clone KN0AAP11YG20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925568 ID=FC925568; Name=FC925568; organism=Citrus clementina; type=EST; length=674bp
TGTCCCTGTCCCTTACAGGAGGGTACCCTGCGGAAGAAGGGGAGGCATCA
GGTTCACAATCAATGGCCATTCCTACTTCAACCTAGTGTTGATCACCAAC
GTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAAGGATCTAGAAC
TGGCTGGCAGCCAATGTCAAGAAACTGGGGCCAAAACTGGCAAAGCAACA
CTTATCTCAATGGCCAAAGCCTGTCATTTGAGGTCACCACAAGCGATGGC
CGTACTGTGACTTCCTACAATGTTGCCCCTGCTGGCTGGTCCTTTGGCCG
AACTTACTCCGGTGCTCAATTCCGCTAGAGCCACCAAGACCATTAGAGAT
TGGGTTTTAACACCTTTTTTAGCTATATATTCGTGTACTAAGTAGTATAT
TTTAGTATGAAATTTTAGCATACTAGGGTATATATATATATATATAATAT
AGAAGTAGCTATGTGGCTAGTTTTTGGCTTCCAGGGTCCAAAATGAAAAA
AAAGGGCTTATTTTAAAATGGCTTATTTTTTTCATTTTCAATTGATTTTT
ATGGTTGCGTGGGGTGTCTAATTATGGGATCCTCTTATTATCCTGGGGAT
CCTTTTTTTACCTTTCTTTTTGGGGGTTTCTGTTGAAGTGCACCAGATGG
CTGAGGTGGAAATTTTTCCCCCCC
back to top