FC925569

Overview
NameFC925569
Unique NameFC925569
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925569 vs. ExPASy Swiss-Prot
Match: UPL5_ARATH (E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.223e-12
Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 2 
Query:  530 LQFFIRMMSEGKTMVIQADSNDTVKSIHERIQAMTGIPLIEQRLIYRGKQLQWEQSLAECCIQ 718
            LQ F+RMMS GKT+VI A+  DTV+ +H+RI+  T IP +EQR+IY+GKQLQ E SL    I+
Sbjct:   95 LQIFVRMMSGGKTIVIHAEKYDTVEKLHQRIEWKTKIPALEQRVIYKGKQLQRENSLTYYSIE 157
The following BLAST results are available for this feature:
BLAST of FC925569 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UPL5_ARATH1.223e-1257.14E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis th... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YL22FM1 TF Citrus clementina cDNA clone KN0AAP8YL22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925569 ID=FC925569; Name=FC925569; organism=Citrus clementina; type=EST; length=719bp
TCTATTTTCTTTTTCCTTTTTTTTTCCCTCAAATTTACTATATAAACAAA
GACTGATACAGACTCACTGACCGAGCCAAAAAAAAGAAAAAATAAAAATG
AAAACTGCTTTACTACTTATTAGCTGCTAGGGTTCTTGTTTTTCTAATTT
CTATTTTTGGAGTTTTCAATTTAATAGTTATCTTCTCCTTCAGCTGCTGC
CTCGGCATTTAACGATCACATGCTCTTACCCCCACCGTAAGCGGCGGGGG
CCCCACTCTTCAATGTCTCCTGTTGAATCGTTTGATCACTCTCACTTCTC
CGTTCACTCGCGTCCGAAACGTAAGTTGGACGATTTTGCCCCTAACTTAG
ACGGCGACGATGACGACGGCGCAGAAACATCCGACCTTGTTTCTGTAAGA
ATGCGGAAAGACGAACCTGACGCCGTCCACCACCAGCAGTCGTCAGACTT
GATGACAAAAAACGACGCCGTTCTCTCAGAAATTACTCCTCCTGCCGCTG
CCGCTCCTCCTCCTCCTCCTCGGCCAAGGCTCCAGTTTTTTATACGCATG
ATGTCTGAGGGGAAGACGATGGTCATCCAAGCCGACTCGAACGACACCGT
CAAATCAATCCATGAAAGAATCCAAGCGATGACGGGGATACCGTTGATCG
AGCAACGGTTAATTTACCGGGGGAAGCAGTTACAGTGGGAACAGTCCTTA
GCTGAGTGTTGCATCCAAA
back to top