FC925597

Overview
NameFC925597
Unique NameFC925597
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925597 vs. ExPASy Swiss-Prot
Match: UBP19_ARATH (Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana GN=UBP19 PE=2 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 8.846e-53
Identity = 112/204 (54.90%), Postives = 136/204 (66.67%), Query Frame = 2
Query:    2 KRLTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPSYLVDTESSSSRKEEPSAVNAETEPKEVECSSTMESINPNSRSLSLPCDD-FSHLRVSSC-KSKSAGAIDPQAVPAHFKDTNVDNIE 607
            KRL+ R APNILTIALKRFQ GRFGKLNKR++FPET DL PYMS GG+ +DVYKLYAV+VH+DMLNASFFGHYICYVKDFRG+WYR+DD +V  V+LE+VLSQ AYMLLY+RV  RPS L   ES   +K +   +N E+     + S     +  N  S+S  C+   SH       K  S  A  P +      D  VD ++
Sbjct:  368 KRLSIRCAPNILTIALKRFQGGRFGKLNKRISFPETFDLGPYMSGGGEGSDVYKLYAVIVHLDMLNASFFGHYICYVKDFRGNWYRIDDSEVEKVELEDVLSQRAYMLLYSRVQPRPSNLRSEESQDEKKTD--TLNTESNQ---DGSVESSGVGTNDTSVSSLCNGIISHSEDPEYEKESSLSASVPVSEEGKEVDVKVDTVD 566          
BLAST of FC925597 vs. ExPASy Swiss-Prot
Match: UBP18_ARATH (Ubiquitin carboxyl-terminal hydrolase 18 OS=Arabidopsis thaliana GN=UBP18 PE=2 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 1.668e-51
Identity = 99/158 (62.66%), Postives = 126/158 (79.75%), Query Frame = 2
Query:    2 KRLTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPSYLVDTESSSSRKEEPSAVNAETEPKEVECSSTMESINPNS 475
            KRLT RRAPNILTIALKR+Q GR+GKLNKR++FPETLDL+PYMS+GGD +DVYKLYAV+VH+DMLNASFFGHYICY+KDF G+WYR+DD ++ SV+LE+VLSQ AYMLLY+R+ AR S      S    +++   ++ E+  KE+  SS + +I   S
Sbjct:  362 KRLTIRRAPNILTIALKRYQGGRYGKLNKRISFPETLDLNPYMSEGGDGSDVYKLYAVIVHLDMLNASFFGHYICYIKDFCGNWYRIDDSEIESVELEDVLSQRAYMLLYSRIQARSSSSC-LRSEVKDEKKTDTLDTESCVKELVESSMVGAIESRS 518          
BLAST of FC925597 vs. ExPASy Swiss-Prot
Match: UBP16_ARATH (Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana GN=UBP16 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.161e-36
Identity = 76/165 (46.06%), Postives = 110/165 (66.67%), Query Frame = 2
Query:    2 KRLTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPSYL---VDTESSSSRKEEPSAVNAETEPKEVECSSTMESINPNSRSLS 487
            K+L     PN+LTIALKRFQ+G+FGKLNK + FPETLDL+PY+S G +++  YKLY V+VH+D++NA+F GHY+CY+++ +  WY+ DD  V + D+E +L++GAYML Y R +  P  L     TE+S+ +   P        PK  E S+   S++ +S  LS
Sbjct:  736 KKLKITEPPNVLTIALKRFQAGKFGKLNKLIRFPETLDLAPYVSGGSEKSHDYKLYGVIVHLDVMNAAFSGHYVCYIRN-QNKWYKADDSTVVTSDVERILTKGAYMLFYARCTPTPPRLAVCTKTEASNKKSRVPL-------PKANEKSTISRSVSTSSPELS 892          
BLAST of FC925597 vs. ExPASy Swiss-Prot
Match: UBP15_ARATH (Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana GN=UBP15 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.377e-36
Identity = 80/173 (46.24%), Postives = 109/173 (63.01%), Query Frame = 2
Query:    2 KRLTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARP--------SYLVDTESSSSRKEEPSAVN---AETEPKEVECSSTMESINPNSRSLS 487
            K L+   APNILTI LKRFQ GR+GK+NK ++FPE LD+ P+M+  GD   +Y LYAV+VH+D LNASF GHYI YVKD RG+WYR+DD ++  V + +V+S+GAYML Y R   RP        + +  ++  +  KE+   VN      + K  E SS+  S+  +S   S
Sbjct:  632 KELSIHEAPNILTIVLKRFQEGRYGKINKCISFPEMLDMIPFMTRTGDVPPLYMLYAVIVHLDTLNASFSGHYISYVKDLRGNWYRIDDSEIHPVPMTQVMSEGAYMLFYMRSYPRPQRGEHNGKAPVHHSQPRNEMKEQRKPVNRFKPRADHKNTESSSSEWSLFTSSDEAS 804          
BLAST of FC925597 vs. ExPASy Swiss-Prot
Match: UBP17_ARATH (Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana GN=UBP17 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.495e-33
Identity = 83/189 (43.92%), Postives = 111/189 (58.73%), Query Frame = 2
Query:    2 KRLTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDG--GDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPSYLVDTESSSSRKEEPSAVNAETEPK--EVECSSTMESINPNSRSLSLPCDDFSHLRVSSCKSKSAGAID 556
            K+L     PNILT+ LKRFQS  FGKL+K + FPE LD+SPYMSD   GD   VY LYAVVVH+D ++  F GHY+CY+K   G W+++DD  V  V LE VL +GAYMLLY R S RP        S  R+   +  + +   K  + + +S +  ++ +S SLS      S    SSC +K +  I+
Sbjct:  520 KKLMILEGPNILTVVLKRFQSDNFGKLSKPIHFPELLDISPYMSDPNHGDHP-VYSLYAVVVHLDAMSTLFSGHYVCYIKTLDGDWFKIDDSNVFPVQLETVLLEGAYMLLYARDSPRPVSKNGGRKSKQRRNLAAIPSRKGNKKQRDGDNNSLLPRVDWSSGSLSSMFS--SSDTTSSCSTKDSSGIE 705          
BLAST of FC925597 vs. ExPASy Swiss-Prot
Match: UBP36_HUMAN (Ubiquitin carboxyl-terminal hydrolase 36 OS=Homo sapiens GN=USP36 PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 2.350e-21
Identity = 57/139 (41.01%), Postives = 79/139 (56.83%), Query Frame = 2
Query:    2 KRLTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRV---SARPSYLVDTESSSSRKEEPSAV 409
            KR T  R  N+LT++LKRF +   GK+ K V +PE L++ PYMS       +Y LYAV+VH     +   GHY CYVK   G WY+++D  V S +++ VL+Q AY+L Y R+      P  L+    SSS    PS +
Sbjct:  313 KRFTIHRTSNVLTLSLKRFANFSGGKITKDVGYPEFLNIRPYMSQNNGDPVMYGLYAVLVHSGY--SCHAGHYYCYVKASNGQWYQMNDSLVHSSNVKVVLNQQAYVLFYLRIPGSKKSPEGLISRTGSSSLPGRPSVI 449          
BLAST of FC925597 vs. ExPASy Swiss-Prot
Match: UBP42_HUMAN (Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens GN=USP42 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.234e-21
Identity = 52/112 (46.43%), Postives = 69/112 (61.61%), Query Frame = 2
Query:    2 KRLTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNR 337
            KR T  R+ N+LT++LKRF +   GK+ K V +PE LD+ PYMS       VY LYAV+VH         GHY CY+K   G WY+++D  V++ D+  VLSQ AY+L Y R
Sbjct:  302 KRFTIHRSSNVLTLSLKRFANFTGGKIAKDVKYPEYLDIRPYMSQPNGEPIVYVLYAVLVHTGF--NCHAGHYFCYIKASNGLWYQMNDSIVSTSDIRSVLSQQAYVLFYIR 411          
BLAST of FC925597 vs. ExPASy Swiss-Prot
Match: U17L2_HUMAN (Ubiquitin carboxyl-terminal hydrolase 17-like protein 2 OS=Homo sapiens GN=USP17L2 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20
Identity = 59/139 (42.45%), Postives = 74/139 (53.24%), Query Frame = 2
Query:    2 KRLTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPSYLVDTESSSSRKEEPSAVNAE 418
            K LT   +  +L + LKRF      KL K V +PE LD+ PYMS       VY LYAV+VH     +   GHY  YVK   G WY++DD KVT+  +  VLSQ AY+L Y + S    +      S SR  EP A+ AE
Sbjct:  265 KTLTLHTSAKVLILVLKRFSDVTGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGW--SCHDGHYFSYVKAQEGQWYKMDDAKVTACSITSVLSQQAYVLFYIQKSEWERH----SESVSRGREPRALGAE 397          
BLAST of FC925597 vs. ExPASy Swiss-Prot
Match: UBP36_MOUSE (Ubiquitin carboxyl-terminal hydrolase 36 OS=Mus musculus GN=Usp36 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 50/113 (44.25%), Postives = 70/113 (61.95%), Query Frame = 2
Query:    2 KRLTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRV 340
            KR T  R  N+LT++LKRF +   GK+ K V +PE L++ PYMS       +Y LYAV+VH     +   GHY CYVK   G WY+++D  V S +++ VL+Q AY+L Y R+
Sbjct:  313 KRFTIHRTSNVLTLSLKRFANFSGGKITKDVGYPEFLNIRPYMSQSSGDPVMYGLYAVLVHSGY--SCHAGHYYCYVKASNGQWYQMNDSLVHSSNVKVVLNQQAYVLFYLRI 423          
BLAST of FC925597 vs. ExPASy Swiss-Prot
Match: UBP17_HUMAN (Ubiquitin carboxyl-terminal hydrolase 17 OS=Homo sapiens GN=USP17A PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 57/139 (41.01%), Postives = 74/139 (53.24%), Query Frame = 2
Query:    2 KRLTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPSYLVDTESSSSRKEEPSAVNAE 418
            K LT   +  +L + LKRF      K+ K V +PE LD+ PYMS       VY LYAV+VH     +   GHY  YVK   G WY++DD +VT+  +  VLSQ AY+L Y + S    +      S SR  EP A+ AE
Sbjct:  265 KTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGW--SCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERH----SESVSRGREPRALGAE 397          
The following BLAST results are available for this feature:
BLAST of FC925597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
UBP19_ARATH8.846e-5354.90Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabid... [more]
UBP18_ARATH1.668e-5162.66Ubiquitin carboxyl-terminal hydrolase 18 OS=Arabid... [more]
UBP16_ARATH1.161e-3646.06Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabid... [more]
UBP15_ARATH3.377e-3646.24Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabid... [more]
UBP17_ARATH3.495e-3343.92Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabid... [more]
UBP36_HUMAN2.350e-2141.01Ubiquitin carboxyl-terminal hydrolase 36 OS=Homo s... [more]
UBP42_HUMAN5.234e-2146.43Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo s... [more]
U17L2_HUMAN1.523e-2042.45Ubiquitin carboxyl-terminal hydrolase 17-like prot... [more]
UBP36_MOUSE9.871e-2044.25Ubiquitin carboxyl-terminal hydrolase 36 OS=Mus mu... [more]
UBP17_HUMAN9.871e-2041.01Ubiquitin carboxyl-terminal hydrolase 17 OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YM08FM1 TF Citrus clementina cDNA clone KN0AAP8YM08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925597 ID=FC925597; Name=FC925597; organism=Citrus clementina; type=EST; length=698bp
GAAGCGGTTAACTTTTCGACGAGCTCCGAACATTCTCACAATTGCCTTAA
AAAGATTTCAGAGCGGAAGATTTGGGAAACTTAACAAAAGAGTTACTTTT
CCTGAGACTTTGGACCTAAGTCCTTACATGAGTGATGGAGGAGATCGTAC
AGATGTCTACAAGCTATATGCTGTTGTTGTCCATGTGGACATGCTTAATG
CCTCGTTTTTTGGTCACTATATCTGTTACGTCAAGGATTTTCGTGGACAC
TGGTACAGAGTTGATGACTGTAAGGTTACTAGTGTTGATTTGGAAGAGGT
ACTTTCTCAGGGAGCATATATGCTTCTATATAACAGGGTTTCAGCACGAC
CTTCATATTTAGTCGATACTGAATCTTCGAGTTCAAGGAAGGAGGAGCCC
AGTGCAGTTAATGCAGAAACAGAGCCAAAAGAAGTTGAATGCTCCTCTAC
CATGGAGTCAATTAATCCCAATAGCAGGTCTCTTTCCCTCCCATGTGATG
ACTTTTCGCATTTGAGGGTTTCAAGTTGCAAAAGCAAGTCAGCTGGGGCA
ATTGATCCTCAAGCGGTACCAGCACATTTCAAGGATACTAATGTGGACAA
TATAGAGTCAAAGTTCCAACGGTGTTTTCAGTCATGAAAGTCATTCTTCT
TCTTTTTGGCTTTAATTCTGAAGATTTAAGAGTAGATGCCATGGATGT
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