FC925598

Overview
NameFC925598
Unique NameFC925598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925598 vs. ExPASy Swiss-Prot
Match: ATB40_ARATH (Homeobox-leucine zipper protein ATHB-40 OS=Arabidopsis thaliana GN=ATHB-40 PE=2 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 4.850e-44
Identity = 98/171 (57.31%), Postives = 125/171 (73.10%), Query Frame = 3
Query:  111 NHQVEDNKSNMVLLSQFYPSDVLTPTGIVPQQGEPSKPKRRQRKRN---TNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMSELIEGISLHNP 614
            N+ V+D   NM  +SQ YP DV T   IV   GE  +PKRR++K      + +GG    +KRKLT EQ  +LEM FG+EHKLES+RKD+LAAELGLDPRQVAVWFQNRRAR K K++EE Y  LK +H+NVVV+K RLESEV  LKE+L  AE+EI++++E +EG S ++P
Sbjct:    2 NYTVDDQ--NMAFISQLYP-DVYTQ--IVQPVGEVKQPKRRRKKTKGSVASADGGNGLFRKRKLTDEQVNMLEMSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYNKLKNSHDNVVVDKCRLESEVIQLKEQLYDAEREIQRLAERVEGGSSNSP 167          
BLAST of FC925598 vs. ExPASy Swiss-Prot
Match: ATB21_ARATH (Homeobox-leucine zipper protein ATHB-21 OS=Arabidopsis thaliana GN=ATHB-21 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.942e-41
Identity = 93/184 (50.54%), Postives = 132/184 (71.74%), Query Frame = 3
Query:  111 NHQVEDNKSNMVLLSQFYPSDVLTPTGIVPQQGEPSKPKRRQRKRNTN----------GNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMSELIEGISLHNPSATIPT 632
            N  V+D+  N++L+SQ YP+ V TP  +VPQQG  +KP RR+++++ +          GNG FR   KRKL+ EQ  +LE+ F ++HKLES+RKD+LA+ELGLDPRQVAVWFQNRRAR K K++E+ Y  LK A+E  VVEK RL+SEV  LKE+L  AE+EI+++++ +EG   ++P ++  T
Sbjct:    3 NQNVDDH--NLLLISQLYPN-VYTP--LVPQQGGEAKPTRRRKRKSKSVVVAEEGENEGNGWFR---KRKLSDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKRVEDEYTKLKNAYETTVVEKCRLDSEVIHLKEQLYEAEREIQRLAKRVEGTLSNSPISSSVT 178          
BLAST of FC925598 vs. ExPASy Swiss-Prot
Match: ATB53_ARATH (Homeobox-leucine zipper protein ATHB-53 OS=Arabidopsis thaliana GN=ATHB-53 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.157e-37
Identity = 88/179 (49.16%), Postives = 117/179 (65.36%), Query Frame = 3
Query:  141 MVLLSQFYPSDVLTPTG--IVPQQ---GEPSKPKRRQRKRNTNGNGGFRA---------LKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMSELIEGISLHNPSATIPTD 635
            M+L SQ YP          I+  Q   GE SKP +R+RKR + G+              L+KRKLT EQ  +LE  FGNEHKLES RK+K+A ELGLDPRQVAVWFQNRRAR K KK+EE YA LK  H+NVV+ + +LES++  L E+LS A+ EI+K+SE +E +  ++ S+++  +
Sbjct:   11 MMLGSQVYPYTTQPQNSHCIIVNQIDGGEESKPVKRRRKRRSKGSSATNEEDVAEIGGMLRKRKLTDEQVNMLEYSFGNEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKNHHDNVVLGQCQLESQILKLTEQLSEAQSEIRKLSERLEEMPTNSSSSSLSVE 189          
BLAST of FC925598 vs. ExPASy Swiss-Prot
Match: HOX14_ORYSJ (Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. japonica GN=HOX14 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.407e-29
Identity = 70/158 (44.30%), Postives = 104/158 (65.82%), Query Frame = 3
Query:  126 DNKSNMVLLSQFYPSDVLTPTGIVPQQGEPSKPKRRQRK--RNTNGNGGFRAL-----KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKM 578
            + +    + + +  + +L  +G V  QGE  + +RR+R+  R   G GG   +     KKR+L+ EQ E+LE+ F  E KLE+ RK  LA+ELGLDP+QVAVWFQNRRAR K+K +EE ++ LK AH+  ++ K  LE+EV  LKE+L VAE+E++++
Sbjct:    6 EKQQQQQMFASYVDASLLAASGEV--QGERPRARRRRRRGARCVGGGGGGGEVDGGDPKKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDAAILHKCHLENEVLRLKERLVVAEEEVRRL 161          
BLAST of FC925598 vs. ExPASy Swiss-Prot
Match: HOX14_ORYSI (Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. indica GN=HOX14 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.407e-29
Identity = 70/158 (44.30%), Postives = 104/158 (65.82%), Query Frame = 3
Query:  126 DNKSNMVLLSQFYPSDVLTPTGIVPQQGEPSKPKRRQRK--RNTNGNGGFRAL-----KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKM 578
            + +    + + +  + +L  +G V  QGE  + +RR+R+  R   G GG   +     KKR+L+ EQ E+LE+ F  E KLE+ RK  LA+ELGLDP+QVAVWFQNRRAR K+K +EE ++ LK AH+  ++ K  LE+EV  LKE+L VAE+E++++
Sbjct:    6 EKQQQQQMFASYVDASLLAASGEV--QGERPRARRRRRRGARCVGGGGGGGEVDGGDPKKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDAAILHKCHLENEVLRLKERLVVAEEEVRRL 161          
BLAST of FC925598 vs. ExPASy Swiss-Prot
Match: HOX12_ORYSJ (Homeobox-leucine zipper protein HOX12 OS=Oryza sativa subsp. japonica GN=HOX12 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.673e-26
Identity = 64/133 (48.12%), Postives = 90/133 (67.67%), Query Frame = 3
Query:  207 GEPSKPKRRQRKRN--------TNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMS 581
            GE  K ++R+R++            +GG    KKR+L+ EQA  LEM F  E KLE+ RK +LAAELGLD +QVAVWFQNRRAR K+K +EE +A L++AH+ VV++   LE+E+  LKE+L+  E+E  K++
Sbjct:   29 GEQKKARQRRRRKVKPEAAAALAGESGGDEQAKKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFAKLRSAHDAVVLQNCHLETELLKLKERLADVEEEKAKLA 161          
BLAST of FC925598 vs. ExPASy Swiss-Prot
Match: HOX12_ORYSI (Homeobox-leucine zipper protein HOX12 OS=Oryza sativa subsp. indica GN=HOX12 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.673e-26
Identity = 64/133 (48.12%), Postives = 90/133 (67.67%), Query Frame = 3
Query:  207 GEPSKPKRRQRKRN--------TNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMS 581
            GE  K ++R+R++            +GG    KKR+L+ EQA  LEM F  E KLE+ RK +LAAELGLD +QVAVWFQNRRAR K+K +EE +A L++AH+ VV++   LE+E+  LKE+L+  E+E  K++
Sbjct:   29 GEQKKARQRRRRKVKPEAAAALAGESGGDEQAKKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFAKLRSAHDAVVLQNCHLETELLKLKERLADVEEEKAKLA 161          
BLAST of FC925598 vs. ExPASy Swiss-Prot
Match: HAT5_ARATH (Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.192e-20
Identity = 52/97 (53.61%), Postives = 68/97 (70.10%), Query Frame = 3
Query:  279 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTA-------HENVVVEKTRLESEVATLKEKL 548
            KKR+LT EQ  LLE  F  E+KLE +RK +LA +LGL PRQVAVWFQNRRAR KTK++E  Y  LK+        ++++V++  +L SEV +L EKL
Sbjct:   68 KKRRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSTYDQLLSNYDSIVMDNDKLRSEVTSLTEKL 164          
BLAST of FC925598 vs. ExPASy Swiss-Prot
Match: HOX16_ORYSJ (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. japonica GN=HOX16 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.165e-19
Identity = 52/101 (51.49%), Postives = 67/101 (66.34%), Query Frame = 3
Query:  279 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTA-------HENVVVEKTRLESEVATLKEKLSVAE 560
            KKR+LT EQ  LLE  F  E+KLE +RK +LA +LGL PRQVAVWFQNRRAR KTK++E  +  LK +       H+ ++ +  RL S+V +L EKL   E
Sbjct:   77 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHRLHSQVMSLTEKLQEKE 177          
BLAST of FC925598 vs. ExPASy Swiss-Prot
Match: HOX16_ORYSI (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. indica GN=HOX16 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.165e-19
Identity = 52/101 (51.49%), Postives = 67/101 (66.34%), Query Frame = 3
Query:  279 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTA-------HENVVVEKTRLESEVATLKEKLSVAE 560
            KKR+LT EQ  LLE  F  E+KLE +RK +LA +LGL PRQVAVWFQNRRAR KTK++E  +  LK +       H+ ++ +  RL S+V +L EKL   E
Sbjct:   79 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHRLHSQVMSLTEKLQEKE 179          
The following BLAST results are available for this feature:
BLAST of FC925598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
ATB40_ARATH4.850e-4457.31Homeobox-leucine zipper protein ATHB-40 OS=Arabido... [more]
ATB21_ARATH2.942e-4150.54Homeobox-leucine zipper protein ATHB-21 OS=Arabido... [more]
ATB53_ARATH1.157e-3749.16Homeobox-leucine zipper protein ATHB-53 OS=Arabido... [more]
HOX14_ORYSJ4.407e-2944.30Homeobox-leucine zipper protein HOX14 OS=Oryza sat... [more]
HOX14_ORYSI4.407e-2944.30Homeobox-leucine zipper protein HOX14 OS=Oryza sat... [more]
HOX12_ORYSJ2.673e-2648.12Homeobox-leucine zipper protein HOX12 OS=Oryza sat... [more]
HOX12_ORYSI2.673e-2648.12Homeobox-leucine zipper protein HOX12 OS=Oryza sat... [more]
HAT5_ARATH2.192e-2053.61Homeobox-leucine zipper protein HAT5 OS=Arabidopsi... [more]
HOX16_ORYSJ3.165e-1951.49Homeobox-leucine zipper protein HOX16 OS=Oryza sat... [more]
HOX16_ORYSI3.165e-1951.49Homeobox-leucine zipper protein HOX16 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YH07FM1 TF Citrus clementina cDNA clone KN0AAP11YH07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925598 ID=FC925598; Name=FC925598; organism=Citrus clementina; type=EST; length=638bp
CACATTACCAATTTATCATATCCATATATATATATATATTCACACACACA
CACACACACACACATATTTGAGAGAGATTTATGATCAGAGAAATGATCGT
AACAAACACGAATCATCAAGTTGAAGATAACAAAAGTAATATGGTCTTGC
TTTCCCAGTTTTACCCTTCTGATGTTCTCACACCAACTGGAATCGTTCCA
CAACAAGGGGAGCCGTCTAAGCCGAAGCGCAGGCAACGCAAACGGAATAC
TAACGGAAACGGTGGCTTTCGTGCTTTGAAGAAGAGAAAGCTGACGGCTG
AACAAGCTGAGCTTCTTGAGATGCATTTTGGCAACGAACACAAGCTTGAA
TCTGACAGAAAAGACAAGCTCGCTGCTGAGCTCGGACTCGACCCTCGTCA
AGTGGCCGTGTGGTTTCAGAACCGGAGGGCTCGTGATAAGACTAAGAAGA
TTGAGGAGACCTACGCTACCTTGAAGACCGCTCATGAAAATGTCGTCGTG
GAGAAAACCCGACTCGAGTCTGAGGTGGCAACGCTGAAAGAGAAGCTTTC
CGTTGCCGAGAAGGAGATTAAGAAAATGTCAGAGCTCATTGAAGGGATTT
CACTCCATAATCCGAGTGCCACGATCCCCACGGACATG
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