FC925619
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC925619 vs. ExPASy Swiss-Prot
Match: PP384_ARATH (Pentatricopeptide repeat-containing protein At5g15280 OS=Arabidopsis thaliana GN=At5g15280 PE=2 SV=1) HSP 1 Score: 202.986 bits (515), Expect = 1.089e-51 Identity = 102/213 (47.89%), Postives = 138/213 (64.79%), Query Frame = 3 Query: 3 YLDLDRDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGF 641 YL D D YE++++ +++ S++P FNSLI G+L+ AL L+DEM RWGQ+LS F+ L++ LCASR+H++ LLEK PKLA +LD E+LN L+Q CKKG R K IF M+Q I+N +YT+L+ CKK + DL W AQN WLP L DC L CL K L++E +QLFE + +S P +S+ C IF+EKL V GF Sbjct: 507 YLHTDLDAYEQRVNMVLDRSVLPEFNSLIVRASEDGDLQTALRLLDEMARWGQKLSRRSFAVLMRSLCASRAHLRVSISLLEKWPKLAYQLDGETLNFLVQEYCKKGFSRHSKLIFHKMVQMHHPIDNVTYTSLIRCFCKKETLNDLLNVWGAAQNDNWLPDLNDCGDLWNCLVRKGLVEEVVQLFERVFISYPLSQSEACRIFVEKLTVLGF 719
BLAST of FC925619 vs. ExPASy Swiss-Prot
Match: PPR26_ARATH (Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.699e-12 Identity = 47/189 (24.87%), Postives = 94/189 (49.74%), Query Frame = 3 Query: 6 LDLDRDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECML 572 +DL ++ Y++ LSK ++ ++ +N+L+ G+L AA +VD M+R G ++ L+ G C ++ + ++M + +LD+ + L+ CK+G V D ++ ML+ G+ ++ +YT ++ + CKKG + Q+ +P + L+ LC +K + L + ML Sbjct: 361 IDLMKESYQKMLSKGLQPDIVL-YNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRG-GDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAML 547
BLAST of FC925619 vs. ExPASy Swiss-Prot
Match: PP106_ARATH (Pentatricopeptide repeat-containing protein At1g64582, mitochondrial OS=Arabidopsis thaliana GN=At1g64582 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.438e-11 Identity = 45/176 (25.57%), Postives = 86/176 (48.86%), Query Frame = 3 Query: 75 FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDI 602 +N+LI + G L AL L++EM + G + ++ L+ GLC S A L + M + N D + LI K+G + + ++++ M+Q + N +Y +++ LC G + D +D+ ++ P + +L+ C +++ E ++LF+ M SC +DI Sbjct: 179 YNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINP-DVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRM--SCEGFNADI 351
BLAST of FC925619 vs. ExPASy Swiss-Prot
Match: PP326_ARATH (Pentatricopeptide repeat-containing protein At4g19895 OS=Arabidopsis thaliana GN=At4g19895 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.879e-11 Identity = 55/221 (24.89%), Postives = 101/221 (45.70%), Query Frame = 3 Query: 27 YERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQL----FEC----------MLVSCPCLRSDI--CYIFLEKLCVTGF 641 Y RK+ + + NF SLI + +G++K A +++EMVR G + ++ +AL+ GLC KA L+ + K + + +I CK+ + + +F M ++GL +YTTL+ CK G + ++ + ++P + + ++ LC K E+ +L F C +L+ C ++DI F ++ TGF Sbjct: 274 YFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGF 494
BLAST of FC925619 vs. ExPASy Swiss-Prot
Match: PP156_ARATH (Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.454e-11 Identity = 42/154 (27.27%), Postives = 77/154 (50.00%), Query Frame = 3 Query: 111 NLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKM-PKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECM 569 ++ +A + D+MV+ G L++ F+ LV G C ++ G+LE+M + D + N +++A KKG + D K++ M + GL +Y L+ CK G +K+ ++ + LP L L+ LC+ ++E L+L + M Sbjct: 184 SISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLE-GKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAM 336
BLAST of FC925619 vs. ExPASy Swiss-Prot
Match: PPR92_ARATH (Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 3.204e-11 Identity = 52/182 (28.57%), Postives = 80/182 (43.96%), Query Frame = 3 Query: 33 RKLSKIIEDSMIPN---FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECM 569 R LS +I+ + PN +++L+ G + A L +EMVR + + +S+L+ GLC I + + M D S N LI CK V DG K+F M QRGL +Y TL+ + G + F+ P + L+ LC L+++L +FE M Sbjct: 246 RLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCL-HDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDM 426
BLAST of FC925619 vs. ExPASy Swiss-Prot
Match: PPR37_ARATH (Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.185e-11 Identity = 52/206 (25.24%), Postives = 96/206 (46.60%), Query Frame = 3 Query: 21 DEYERKLSKIIEDSMIPN---FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLC 629 D+ + L +I+ + P+ F++LI G L+ A L EM++ G +++L+ G C KA +L+ M + + N+LI CK L+ DG ++F M RG+ + +Y TL+ C+ G ++ + +R+ P + K L++ LC +++L++FE + S L I I + +C Sbjct: 299 DDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKA-NHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMC 503
BLAST of FC925619 vs. ExPASy Swiss-Prot
Match: PPR36_ARATH (Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.466e-11 Identity = 51/206 (24.76%), Postives = 93/206 (45.15%), Query Frame = 3 Query: 21 DEYERKLSKIIEDSMIPN---FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLC 629 D+ + L +I+ + PN F+ LI G L+ A L EM+ G +++L+ G C +H+ +++ M + + N+LI CK + DG ++F M RG+ + +Y TL+ C+ G + + +RK P + K L++ LC +++L++FE + S L I I + +C Sbjct: 315 DDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFC-KENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMC 519
BLAST of FC925619 vs. ExPASy Swiss-Prot
Match: PP340_ARATH (Pentatricopeptide repeat-containing protein At4g28010 OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.466e-11 Identity = 55/203 (27.09%), Postives = 94/203 (46.31%), Query Frame = 3 Query: 39 LSKIIEDSMIPN---FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTG 638 L ++ +S++P+ +N++I+ L+ AL L +EM G SL + L+ C + +A G L++M + + D LI+ C G + GK +FD +L+RG + +Y TL+ CK G +K+ ++ R P + L++ LC KE+LQL M+ + I + KLC G Sbjct: 165 LREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAM-GFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDG 366
BLAST of FC925619 vs. ExPASy Swiss-Prot
Match: PP101_ARATH (Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2) HSP 1 Score: 67.0106 bits (162), Expect = 9.324e-11 Identity = 54/203 (26.60%), Postives = 91/203 (44.83%), Query Frame = 3 Query: 39 LSKIIEDSMIPN---FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTG 638 LS +IE + PN FN+LI G A L D+M++ + + +++L+ G C + + E M D ++ N LI+ CK V DG ++F M RGL + +YTTL+ L G + + + P + L++ LC+ L+++L++F+ M S L I +E +C G Sbjct: 243 LSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCM-HDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAG 444 The following BLAST results are available for this feature:
BLAST of FC925619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC925619 ID=FC925619; Name=FC925619; organism=Citrus clementina; type=EST; length=641bpback to top |