FC925619

Overview
NameFC925619
Unique NameFC925619
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length641
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925619 vs. ExPASy Swiss-Prot
Match: PP384_ARATH (Pentatricopeptide repeat-containing protein At5g15280 OS=Arabidopsis thaliana GN=At5g15280 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.089e-51
Identity = 102/213 (47.89%), Postives = 138/213 (64.79%), Query Frame = 3
Query:    3 YLDLDRDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGF 641
            YL  D D YE++++ +++ S++P FNSLI      G+L+ AL L+DEM RWGQ+LS   F+ L++ LCASR+H++    LLEK PKLA +LD E+LN L+Q  CKKG  R  K IF  M+Q    I+N +YT+L+   CKK  + DL   W  AQN  WLP L DC  L  CL  K L++E +QLFE + +S P  +S+ C IF+EKL V GF
Sbjct:  507 YLHTDLDAYEQRVNMVLDRSVLPEFNSLIVRASEDGDLQTALRLLDEMARWGQKLSRRSFAVLMRSLCASRAHLRVSISLLEKWPKLAYQLDGETLNFLVQEYCKKGFSRHSKLIFHKMVQMHHPIDNVTYTSLIRCFCKKETLNDLLNVWGAAQNDNWLPDLNDCGDLWNCLVRKGLVEEVVQLFERVFISYPLSQSEACRIFVEKLTVLGF 719          
BLAST of FC925619 vs. ExPASy Swiss-Prot
Match: PPR26_ARATH (Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.699e-12
Identity = 47/189 (24.87%), Postives = 94/189 (49.74%), Query Frame = 3
Query:    6 LDLDRDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECML 572
            +DL ++ Y++ LSK ++  ++  +N+L+      G+L AA  +VD M+R G       ++ L+ G C     ++    + ++M +   +LD+   + L+   CK+G V D ++    ML+ G+  ++ +YT ++ + CKKG  +         Q+   +P +     L+  LC    +K +  L + ML
Sbjct:  361 IDLMKESYQKMLSKGLQPDIVL-YNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRG-GDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAML 547          
BLAST of FC925619 vs. ExPASy Swiss-Prot
Match: PP106_ARATH (Pentatricopeptide repeat-containing protein At1g64582, mitochondrial OS=Arabidopsis thaliana GN=At1g64582 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.438e-11
Identity = 45/176 (25.57%), Postives = 86/176 (48.86%), Query Frame = 3
Query:   75 FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDI 602
            +N+LI  +   G L  AL L++EM + G    +  ++ L+ GLC S     A   L + M +  N  D  +   LI    K+G + + ++++  M+Q  +   N +Y +++  LC  G + D    +D+  ++   P +    +L+   C  +++ E ++LF+ M  SC    +DI
Sbjct:  179 YNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINP-DVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRM--SCEGFNADI 351          
BLAST of FC925619 vs. ExPASy Swiss-Prot
Match: PP326_ARATH (Pentatricopeptide repeat-containing protein At4g19895 OS=Arabidopsis thaliana GN=At4g19895 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.879e-11
Identity = 55/221 (24.89%), Postives = 101/221 (45.70%), Query Frame = 3
Query:   27 YERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQL----FEC----------MLVSCPCLRSDI--CYIFLEKLCVTGF 641
            Y RK+  +     + NF SLI  +  +G++K A  +++EMVR G + ++   +AL+ GLC      KA    L+ +     K +  +   +I   CK+  +   + +F  M ++GL     +YTTL+   CK G     +   ++  +  ++P +    + ++ LC K    E+ +L    F C          +L+   C ++DI     F  ++  TGF
Sbjct:  274 YFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGF 494          
BLAST of FC925619 vs. ExPASy Swiss-Prot
Match: PP156_ARATH (Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.454e-11
Identity = 42/154 (27.27%), Postives = 77/154 (50.00%), Query Frame = 3
Query:  111 NLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKM-PKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECM 569
            ++ +A  + D+MV+ G  L++  F+ LV G C     ++   G+LE+M  +     D  + N +++A  KKG + D K++   M + GL     +Y  L+   CK G +K+     ++ +    LP L     L+  LC+   ++E L+L + M
Sbjct:  184 SISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLE-GKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAM 336          
BLAST of FC925619 vs. ExPASy Swiss-Prot
Match: PPR92_ARATH (Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.204e-11
Identity = 52/182 (28.57%), Postives = 80/182 (43.96%), Query Frame = 3
Query:   33 RKLSKIIEDSMIPN---FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECM 569
            R LS +I+  + PN   +++L+      G +  A  L +EMVR   +  +  +S+L+ GLC     I     + + M       D  S N LI   CK   V DG K+F  M QRGL     +Y TL+    + G +     F+         P +     L+  LC    L+++L +FE M
Sbjct:  246 RLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCL-HDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDM 426          
BLAST of FC925619 vs. ExPASy Swiss-Prot
Match: PPR37_ARATH (Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.185e-11
Identity = 52/206 (25.24%), Postives = 96/206 (46.60%), Query Frame = 3
Query:   21 DEYERKLSKIIEDSMIPN---FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLC 629
            D+  + L  +I+  + P+   F++LI      G L+ A  L  EM++ G       +++L+ G C      KA   +L+ M       +  + N+LI   CK  L+ DG ++F  M  RG+  +  +Y TL+   C+ G ++     +    +R+  P +   K L++ LC     +++L++FE +  S   L   I  I +  +C
Sbjct:  299 DDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKA-NHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMC 503          
BLAST of FC925619 vs. ExPASy Swiss-Prot
Match: PPR36_ARATH (Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.466e-11
Identity = 51/206 (24.76%), Postives = 93/206 (45.15%), Query Frame = 3
Query:   21 DEYERKLSKIIEDSMIPN---FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLC 629
            D+  + L  +I+  + PN   F+ LI      G L+ A  L  EM+  G       +++L+ G C   +H+     +++ M       +  + N+LI   CK   + DG ++F  M  RG+  +  +Y TL+   C+ G +      +    +RK  P +   K L++ LC     +++L++FE +  S   L   I  I +  +C
Sbjct:  315 DDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFC-KENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMC 519          
BLAST of FC925619 vs. ExPASy Swiss-Prot
Match: PP340_ARATH (Pentatricopeptide repeat-containing protein At4g28010 OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.466e-11
Identity = 55/203 (27.09%), Postives = 94/203 (46.31%), Query Frame = 3
Query:   39 LSKIIEDSMIPN---FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTG 638
            L ++  +S++P+   +N++I+       L+ AL L +EM   G   SL  +  L+   C +    +A  G L++M  +  + D      LI+  C  G +  GK +FD +L+RG +    +Y TL+   CK G +K+    ++    R   P +     L++ LC     KE+LQL   M+       +    I + KLC  G
Sbjct:  165 LREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAM-GFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDG 366          
BLAST of FC925619 vs. ExPASy Swiss-Prot
Match: PP101_ARATH (Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.324e-11
Identity = 54/203 (26.60%), Postives = 91/203 (44.83%), Query Frame = 3
Query:   39 LSKIIEDSMIPN---FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTG 638
            LS +IE  + PN   FN+LI      G    A  L D+M++   +  +  +++L+ G C     +     + E M       D ++ N LI+  CK   V DG ++F  M  RGL  +  +YTTL+  L   G   +    +    +    P +     L++ LC+   L+++L++F+ M  S   L   I    +E +C  G
Sbjct:  243 LSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCM-HDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAG 444          
The following BLAST results are available for this feature:
BLAST of FC925619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PP384_ARATH1.089e-5147.89Pentatricopeptide repeat-containing protein At5g15... [more]
PPR26_ARATH1.699e-1224.87Putative pentatricopeptide repeat-containing prote... [more]
PP106_ARATH1.438e-1125.57Pentatricopeptide repeat-containing protein At1g64... [more]
PP326_ARATH1.879e-1124.89Pentatricopeptide repeat-containing protein At4g19... [more]
PP156_ARATH2.454e-1127.27Pentatricopeptide repeat-containing protein At2g16... [more]
PPR92_ARATH3.204e-1128.57Pentatricopeptide repeat-containing protein At1g62... [more]
PPR37_ARATH4.185e-1125.24Pentatricopeptide repeat-containing protein At1g12... [more]
PPR36_ARATH5.466e-1124.76Pentatricopeptide repeat-containing protein At1g12... [more]
PP340_ARATH5.466e-1127.09Pentatricopeptide repeat-containing protein At4g28... [more]
PP101_ARATH9.324e-1126.60Pentatricopeptide repeat-containing protein At1g63... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YH16FM1 TF Citrus clementina cDNA clone KN0AAP11YH16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925619 ID=FC925619; Name=FC925619; organism=Citrus clementina; type=EST; length=641bp
TTTATTTAGACCTAGACCGAGACGAGTATGAGAGAAAACTAAGTAAGATT
ATTGAAGATTCCATGATACCTAATTTTAACTCTCTTATAAAGATGGTACA
TGCACGTGGTAATTTAAAAGCTGCATTGCTGTTGGTAGATGAAATGGTTC
GCTGGGGTCAAGAACTGTCTCTGTCTGTCTTCTCAGCACTAGTAAAGGGG
CTGTGTGCTTCTCGCTCCCATATCAAGGCGTGCACTGGTCTTCTTGAGAA
AATGCCAAAATTGGCCAATAAGCTAGACCAAGAATCTCTCAATTTGCTTA
TTCAAGCATGCTGCAAGAAGGGATTGGTACGTGATGGGAAGAAAATTTTT
GATGGGATGCTTCAGAGGGGTCTAACAATTGAGAATGAGAGTTATACTAC
TCTATTAATGAGTTTGTGTAAGAAAGGCTTCATCAAGGATCTTCATGCTT
TCTGGGATATTGCTCAAAATAGAAAGTGGTTGCCTGGGTTGGAGGATTGC
AAATCACTTGTGGAATGTCTTTGCCATAAAAAATTGCTGAAAGAATCATT
ACAGCTTTTTGAATGCATGTTAGTGTCCTGTCCCTGCTTAAGGTCAGATA
TTTGTTATATATTCCTGGAAAAGCTTTGTGTTACAGGGTTC
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