FC925648

Overview
NameFC925648
Unique NameFC925648
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length550
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC925648 vs. ExPASy Swiss-Prot
Match: ARFQ_ARATH (Auxin response factor 17 OS=Arabidopsis thaliana GN=ARF17 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 48/115 (41.74%), Postives = 70/115 (60.87%), Query Frame = 3 
Query:    6 YSLFSLSNFISENNHQMSSDGIFGNNMVPKLRRVSTEL-NIGSSQSDNLSPDSHSSVHSFGTELGGNQGCNSTKVGVRSIQLFGKIIHMKQPVESGFGDVVCPHDDGSKGFSERE 347
            +  F+ + FI  N  Q+ ++     + +P L +VSTE+ N GS  SDNLSP+S+++  S G +L GN+G  S K  V SIQLFGKII +++  ESG  +     +DGSK  S+ E
Sbjct:  449 FGSFNPTGFIGGNPPQLFTNNFL--SPLPDLGKVSTEMMNFGSPPSDNLSPNSNTTNLSSGNDLVGNRGPLSKK--VNSIQLFGKIITVEEHSESGPAESGLCEEDGSKESSDNE 559
The following BLAST results are available for this feature:
BLAST of FC925648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ARFQ_ARATH4.641e-1241.74Auxin response factor 17 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YN01FM1 TF Citrus clementina cDNA clone KN0AAP8YN01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925648 ID=FC925648; Name=FC925648; organism=Citrus clementina; type=EST; length=550bp
ATCCTTATAGCCTTTTTAGTTTATCAAACTTCATAAGCGAGAATAATCAT
CAGATGTCCTCTGATGGTATCTTTGGCAACAACATGGTGCCAAAGTTGAG
ACGTGTGTCCACTGAGCTGAACATTGGCAGTTCACAGTCTGACAACTTAT
CACCCGATAGCCACAGTAGTGTGCATTCCTTTGGCACTGAACTTGGTGGG
AACCAGGGCTGTAACTCGACAAAAGTTGGTGTTAGGTCAATTCAGTTGTT
TGGTAAGATCATACATATGAAGCAGCCTGTTGAAAGTGGTTTTGGTGATG
TTGTTTGCCCGCATGATGATGGTAGTAAAGGGTTCAGTGAAAGGGAAGAT
GTGAATTTGCCATTGGATTTGTCCTTGACTTACACAGAACTGCTCAACAG
GTTTGGTATCCAAGGTCGTGGCTCAGAAGTTGAAGATGAAGTAGTTGCTG
AAGCTTGCTCTTTATGAAAAAATAATTGTGCAATGAAATGCAGATATGTT
CCTGTGCAGGTACTCTGGCAGGTGGGAGCAGGAAGATGACTTGGTGGGCT
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