FC925649

Overview
NameFC925649
Unique NameFC925649
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length793
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC925649 vs. ExPASy Swiss-Prot
Match: UTP7_SCHPO (Probable U3 small nucleolar RNA-associated protein 7 OS=Schizosaccharomyces pombe GN=utp7 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.511e-14
Identity = 41/122 (33.61%), Postives = 69/122 (56.56%), Query Frame = 1 
Query:  424 KELDTNMKKYLRGEGANLEILKDKKLKGQLALREELYGKSAKAAAKVEKWLMPSEGGYLEAEGVEKTWRIKQDAIAREVDILSSRNQYDIVLPELGPYTLDFTSSGRYMAAAGRQGHLAVVD 789
            ++++ + KKY RG   N + +KDKKL+  +   EE       + AK E  L     G LEAEG+E+T++ +QD +A  V + ++   + + L + G Y+ D+T  GR +   GR+GH++  D
Sbjct:    9 EDVNASTKKYSRGRKLNPKKIKDKKLRSNIQKIEERIENVESSLAKTEI-LHEDNPGLLEAEGLERTYKFRQDQLAPNVALETATKSFSLDLDKFGGYSFDYTRDGRMILLGGRKGHISAFD 129
[Close]
BLAST of FC925649 vs. ExPASy Swiss-Prot
Match: UTP7_YEAST (U3 small nucleolar RNA-associated protein 7 OS=Saccharomyces cerevisiae GN=UTP7 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13
Identity = 38/102 (37.25%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:  487 KDKKLKGQLALREELYGKSAKAAAKVEKWLMPSEGGYLEAEG-VEKTWRIKQDAIAREVDILSSRNQYDIVLPELGPYTLDFTSSGRYMAAAGRQGHLAVVD 789
            KDKKL+  L   +E Y K+  +AA  + +L+P   GYLE E  +EKT++++Q  I   VD+ ++    D+ L E GPY + +  +G ++   GR+GH+A +D
Sbjct:   38 KDKKLRAGLKKIDEQYKKAVSSAAATD-YLLPESNGYLEPENELEKTFKVQQSEIKSSVDVSTANKALDLSLKEFGPYHIKYAKNGTHLLITGRKGHVASMD 138
The following BLAST results are available for this feature:
BLAST of FC925649 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UTP7_SCHPO4.511e-1433.61Probable U3 small nucleolar RNA-associated protein... [more]
UTP7_YEAST2.239e-1337.25U3 small nucleolar RNA-associated protein 7 OS=Sac... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YN02FM1 TF Citrus clementina cDNA clone KN0AAP8YN02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925649 ID=FC925649; Name=FC925649; organism=Citrus clementina; type=EST; length=793bp
CCTCTCTCTCCTTCTAAACTTGAAGTCTATAACCCTTTCAAGTTTCAGCT
CGGTTAAAAAACGGAGAAAAAAAAAAATAAAACTAAAACCCTAGAGCTCG
GCACTCATCTCCTTCTTCTTCTCTCTGAAATTTGGAACTTCTCGTCGCCG
CCGCCGTTTGAAGCTCGCCGCGGCTGGAAGCTAGGCCCCATCACCGTGTT
ACTGTTGCTGCACTAAGTTCTTCGCCGCACGTTGCTCACCTAGTCTCCGC
TGCACGGCTGCACTGCATCTCCGTTAACTCTCTAAACGGTGCTTGTTGAT
TGCTGATTGGTGTCGGTTTTGCTGGCCTGGGCATCTGTTGAAGATTGCAC
GTCCGGGATGGGTGCGAAAGAAGAGAACGGAGATGGTGGAGGTATTCGGC
CTCCTATTGAACAGGAGATCTCCAAGGAATTAGATACAAACATGAAGAAA
TATCTCAGAGGAGAGGGTGCTAATTTGGAGATTTTAAAAGACAAAAAATT
GAAGGGGCAACTTGCTCTCAGAGAAGAATTATATGGAAAGTCTGCGAAAG
CTGCTGCCAAAGTTGAGAAGTGGCTTATGCCAAGTGAGGGAGGCTATTTG
GAGGCAGAAGGTGTAGAAAAGACATGGCGGATCAAACAAGATGCAATTGC
TCGGGAAGTAGATATCCTAAGCTCCAGAAATCAATATGATATCGTGTTAC
CGGAACTTGGTCCATATACTCTGGATTTTACGTCAAGTGGTCGATATATG
GCAGCTGCTGGACGCCAGGGGCACCTAGCTGTTGTGGACATGA
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