FC925658

Overview
NameFC925658
Unique NameFC925658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925658 vs. ExPASy Swiss-Prot
Match: EXLA2_ARATH (Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 6.858e-84
Identity = 144/208 (69.23%), Postives = 176/208 (84.62%), Query Frame = 1
Query:   52 SSATACDRCVHQTKVAYFSQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQ--GKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSPKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSRYDGK 669
            SSA ACDRC+H +K AYFS ASALSSGAC YGS+A  F  GH+AA +PS+YKDG+GCGACFQ+RCKNPTLCS KGT VI+TDLN +NQTD V+SSRAF A++    G  +D+LK G+VD+EY+RVPC+Y N+ + VRVEESS  PNYLA+K+LYQGGQTE+VA+ +AQVGSS+W YM+R++GAVW T +VPNGALQFRFVVT+ YDGK
Sbjct:   17 SSAAACDRCLHSSKAAYFSSASALSSGACAYGSMATGFFAGHIAAALPSIYKDGSGCGACFQVRCKNPTLCSSKGTTVIVTDLNKTNQTDLVLSSRAFRAMAKPVVGADRDLLKQGIVDIEYRRVPCDYGNKKMNVRVEESSKNPNYLAIKLLYQGGQTEVVAIYIAQVGSSHWSYMTRSHGAVWVTDKVPNGALQFRFVVTAGYDGK 224          
BLAST of FC925658 vs. ExPASy Swiss-Prot
Match: EXLA1_ARATH (Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 2.606e-83
Identity = 144/209 (68.90%), Postives = 177/209 (84.69%), Query Frame = 1
Query:   52 SSATACDRCVHQTKVAYFSQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQ--GKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSPKPNYLAVKVLYQGGQTEMVAMDVAQVGSS-NWGYMSRNYGAVWDTSRVPNGALQFRFVVTSRYDGK 669
            SS  ACDRC+H++K AYFS ASALSSGAC YGS+A SF  GH+AA +PS+YKDGAGCGACFQ+RCKNP LCS KGT V++TDLN SNQTD V+SSRAF A++    G  +D+LK G+VD+EY+RVPC+Y N+N+ VRVEE+S KPNYL +K+LYQGGQTE+V++D+AQVGSS NWGYM+R++GAVW T +VP GA+QFRFVVT  YDGK
Sbjct:   16 SSVNACDRCLHRSKAAYFSSASALSSGACAYGSMATSFFAGHIAAAIPSIYKDGAGCGACFQVRCKNPKLCSTKGTIVMITDLNKSNQTDLVLSSRAFRAMAKPIVGADKDLLKQGIVDIEYQRVPCDYGNKNMNVRVEEASKKPNYLEIKLLYQGGQTEVVSIDIAQVGSSPNWGYMTRSHGAVWVTDKVPTGAIQFRFVVTGGYDGK 224          
BLAST of FC925658 vs. ExPASy Swiss-Prot
Match: EXLA3_ARATH (Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 2.065e-80
Identity = 140/208 (67.31%), Postives = 169/208 (81.25%), Query Frame = 1
Query:   52 SSATACDRCVHQTKVAYFSQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQD--ILKLGVVDVEYKRVPCEYKNQNLAVRVEESSPKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSRYDGK 669
            SS  ACDRC+H++K +YFS ASALSSGAC YG +A SF  GH+AA +PS+YKDGAGCGACFQ+RCKNP LC+ KGT V++TDLN SNQTD V+SSRAF A++    G D  +LK G+VDVEY+RVPC Y  +NL VRVEE+S KPNYLA+K+LYQGGQTE+V +D+A VGSS W YMSR++GAVW T +VP GALQF+F VT  YDGK
Sbjct:   16 SSVNACDRCLHRSKASYFSSASALSSGACAYGPMATSFFAGHIAAAIPSIYKDGAGCGACFQVRCKNPKLCNSKGTIVMVTDLNTSNQTDLVLSSRAFRAMAKPVVGVDKYLLKQGIVDVEYQRVPCNYGKRNLNVRVEEASKKPNYLAIKLLYQGGQTEVVGIDIAPVGSSQWSYMSRSHGAVWATDKVPTGALQFKFTVTGGYDGK 223          
BLAST of FC925658 vs. ExPASy Swiss-Prot
Match: EXLA2_ORYSJ (Expansin-like A2 OS=Oryza sativa subsp. japonica GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.312e-62
Identity = 112/208 (53.85%), Postives = 150/208 (72.12%), Query Frame = 1
Query:   52 SSATACDRCVHQTKVAYFSQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTD-LNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEY-KNQNLAVRVEESSPKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSRYDGK 669
            S  + CDRCV ++K  +   + AL++G+CGYGSLA SFNGGHLAA  P+L++ G GCGACFQ+RCK+  LCS  G +V++TD    +N+TD V+S+ A+ A++  G    +     VDVEYKRVPCEY   +NL++RVEE S  P  L+++ LYQGGQT++VA+DVA VGSSNW +M+R+YG  W T++ P G LQFR VVT  YDGK
Sbjct:   26 SMVSGCDRCVRRSKAGFRDSSIALNAGSCGYGSLAASFNGGHLAAASPALFRGGVGCGACFQVRCKDGKLCSTAGAKVVVTDEARSTNRTDLVLSAAAYAAMARPGMAAQLRTRRAVDVEYKRVPCEYAAGRNLSIRVEEKSRPPRELSIRFLYQGGQTDIVAVDVATVGSSNWKFMTRDYGPAWSTAQAPAGPLQFRVVVTGGYDGK 233          
BLAST of FC925658 vs. ExPASy Swiss-Prot
Match: EXLA3_ORYSJ (Expansin-like A3 OS=Oryza sativa subsp. japonica GN=EXLA3 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.147e-61
Identity = 111/209 (53.11%), Postives = 143/209 (68.42%), Query Frame = 1
Query:   58 ATACDRCVHQTKVAYFSQASAL---SSGACGYGSLALSF--NGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSPKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSRYDGK 669
            A+AC+RCV   K AY    S L     G CGYG++A+    NGG LAAG P  ++ G GCG CFQMRC+N  +CS  G RV+LTD + SN TDF++   AF  L+  G    + KL  + VEY+R+PC+YK++NL++ VEE S +PN L +K LYQGGQT+++A+DVAQVGSS+W +M+R YG VW   R PNG LQFR VVT  YDGK
Sbjct:   26 ASACERCVRNGKAAYSPSLSPLPPGGGGGCGYGAMAMEMELNGGFLAAGGPRQHRGGLGCGRCFQMRCRNAEVCSNAGVRVVLTDFHRSNSTDFLLGGPAFAGLAKPGMAHKLKKLDALSVEYRRIPCDYKDKNLSILVEEQSKRPNNLVIKFLYQGGQTDILAVDVAQVGSSDWRFMTRVYGPVWSIDRAPNGPLQFRAVVTGGYDGK 234          
BLAST of FC925658 vs. ExPASy Swiss-Prot
Match: EXLA1_ORYSJ (Expansin-like A1 OS=Oryza sativa subsp. japonica GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.147e-61
Identity = 108/205 (52.68%), Postives = 149/205 (72.68%), Query Frame = 1
Query:   58 ATACDRCVHQTKVAYFSQASALSSGACGYGSLALSFNGG-HLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSPKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSRYDGK 669
            A+ CDRCV +++ AY++ +  L++G+CGYG+ A +FNGG  LAA  P+LY+ G GCGAC+Q+RCK+  LCS  G RV++TD   +N+T  V+SS AF A++  G    + +L  VDVEYKRVPCEY++++L+VRV+E S  PN L +  LYQGGQT++VA+DVAQVGSS+W +M+R +G  W  +  P G LQ R VVT  YDGK
Sbjct:   33 ASGCDRCVRRSRAAYYTSSLTLTAGSCGYGTAAATFNGGGFLAAAGPALYRGGVGCGACYQVRCKDKKLCSNAGARVVVTDRARTNRTGLVLSSPAFAAMARPGMAASLTELAAVDVEYKRVPCEYRHRSLSVRVDERSRGPNELTISFLYQGGQTDIVAVDVAQVGSSSWKFMTREHGPSWSMANAPPGPLQMRLVVTGGYDGK 237          
BLAST of FC925658 vs. ExPASy Swiss-Prot
Match: EXLB1_ORYSJ (Expansin-like B1 OS=Oryza sativa subsp. japonica GN=EXLB1 PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 4.816e-37
Identity = 79/204 (38.73%), Postives = 119/204 (58.33%), Query Frame = 1
Query:   52 SSATACDRCVHQTKVAYF--SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQ-GKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSPKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTS 654
            S ATA D     ++ AY+  S      +GAC YG+   + N G ++A   SLY+DG GCGAC+Q+RC NP  CS  G  +++TD   S+ TDF++S  AF  ++     G  +L LGVV +EY+RV C Y N+N+  ++ ESS  PNYL  ++ YQ G  +++A+ + +  +     +SR +GAVW     P+G L  R + +S
Sbjct:   20 SKATA-DANFTVSRAAYYPNSDIKGTENGACEYGAFGATLNNGDVSASA-SLYRDGVGCGACYQVRCTNPYYCSPNGVTIVITDSGASDGTDFILSQHAFTRMAQSTDAGTALLTLGVVGIEYRRVSCTYPNKNIVFKITESSNFPNYLEFEIWYQQGNQDIIAVQLCETVNLTCQLLSRTHGAVWAAVSPPSGPLSIRMLFSS 221          
BLAST of FC925658 vs. ExPASy Swiss-Prot
Match: EXLB1_ARATH (Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 6.954e-36
Identity = 70/173 (40.46%), Postives = 100/173 (57.80%), Query Frame = 1
Query:  130 GACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSPKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVV 648
            G CGYG      N G ++     L+ +G GCGAC+Q+RCK P  CS +G  V+ TD    + TDF++S +A+  ++  G    +   GVV+VEY+R+PC Y   NL  ++ E S  P+YLA+ VLY GG  +++A++V Q     W  M R +GAV D    P G L  RF+V
Sbjct:   46 GHCGYGEFGRDINNGEVSGVSWRLWNNGTGCGACYQVRCKIPPHCSEEGVYVVATDSGEGDGTDFILSPKAYGRMARPGTENQLYSFGVVNVEYQRIPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQEDCKEWRRMRRVFGAVHDLQNPPRGTLTLRFLV 218          
BLAST of FC925658 vs. ExPASy Swiss-Prot
Match: EXLA4_ORYSJ (Expansin-like A4 OS=Oryza sativa subsp. japonica GN=EXLA4 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.023e-35
Identity = 85/234 (36.32%), Postives = 136/234 (58.12%), Query Frame = 1
Query:   52 SSATACDRCVHQTKVAYF----SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDL-------NHSNQT-----DFVISSRAFMALSNQG-KGQDILKLGVVDVEYKRVPCEYK-NQNLAVRVEESSPKPNYLAVKVLYQGGQTEMVAMDVAQVGS--------SNWGYMSRNYGA--VWDTSRVPNGALQFRFVVTSRYDGK 669
            ++A +CD C  +          + A+ L+ GACG+G+  +  N   +AA    L++ G  CGAC+Q+RC++  LC   G +V++ D+          N+T      F I+  AF A++ QG    ++ +   ++V+++R+PCEY+ ++ LAVRVEE+S  P +LA++ LYQGGQT++ A+++AQ  +        S+W YM+R  GA  VW TSR P G L+ R VVT+   GK
Sbjct:   30 AAAHSCDWCTPRHSTVSILPTPTHAAHLTGGACGFGAAPMELN---VAAVTADLFRHGHACGACYQLRCRDRRLCGEDGVKVVVADMAKQPEQEGEMNRTAGGSLQFRITEDAFAAMAKQGVSAHELTRQRTLEVDFRRIPCEYRESRRLAVRVEEASRNPTHLAIRFLYQGGQTDIAAVEIAQANATPPSSSYYSSWRYMTRRDGAPGVWTTSRAPVGPLRLRVVVTAGSGGK 260          
BLAST of FC925658 vs. ExPASy Swiss-Prot
Match: EXB10_ORYSJ (Expansin-B10 OS=Oryza sativa subsp. japonica GN=EXPB10 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.649e-27
Identity = 62/186 (33.33%), Postives = 103/186 (55.38%), Query Frame = 1
Query:  124 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQT--DFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSPKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW--DTSRVPNGALQFRFVVTSRYDGK 669
            + GACGY  +  +   G  + G   ++KDG GCG+CF+++C  P  CS K   + +TD+N        F +S  AF A++ +GK +++ K G++D++++RV C+Y  +       E    PNY AV V Y GG  ++V +++ + GS  W  ++ ++GA+W  DT +   G    R  VT+  D K
Sbjct:   60 NGGACGYKDIDKAPFLGMNSCGNDPIFKDGKGCGSCFEVKCSKPEACSDKPVIIHITDMNTEPIAAYHFDLSGHAFGAMAKEGKDEELRKAGIIDMQFRRVRCKYPGETKVTFHVEKGSNPNYFAVLVKYVGGDGDVVKVELKEKGSEEWKPLNESWGAIWRIDTPKPLKGPFSLR--VTTESDQK 243          
The following BLAST results are available for this feature:
BLAST of FC925658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
EXLA2_ARATH6.858e-8469.23Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 ... [more]
EXLA1_ARATH2.606e-8368.90Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 ... [more]
EXLA3_ARATH2.065e-8067.31Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 ... [more]
EXLA2_ORYSJ3.312e-6253.85Expansin-like A2 OS=Oryza sativa subsp. japonica G... [more]
EXLA3_ORYSJ2.147e-6153.11Expansin-like A3 OS=Oryza sativa subsp. japonica G... [more]
EXLA1_ORYSJ2.147e-6152.68Expansin-like A1 OS=Oryza sativa subsp. japonica G... [more]
EXLB1_ORYSJ4.816e-3738.73Expansin-like B1 OS=Oryza sativa subsp. japonica G... [more]
EXLB1_ARATH6.954e-3640.46Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 ... [more]
EXLA4_ORYSJ2.023e-3536.32Expansin-like A4 OS=Oryza sativa subsp. japonica G... [more]
EXB10_ORYSJ2.649e-2733.33Expansin-B10 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YI07FM1 TF Citrus clementina cDNA clone KN0AAP11YI07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925658 ID=FC925658; Name=FC925658; organism=Citrus clementina; type=EST; length=670bp
TCTTTCTCATTAATAATGGTTTTGTTTCTTTGCTTTCTCTTCTTTCTCTT
CTCTTCTGCTACTGCTTGTGATCGCTGTGTGCACCAAACCAAGGTTGCTT
ATTTCTCCCAAGCCTCTGCACTTTCATCCGGGGCATGTGGATATGGTTCA
TTAGCATTAAGCTTCAATGGTGGACACCTTGCTGCTGGTGTTCCTTCCCT
TTACAAAGATGGAGCTGGTTGTGGTGCATGCTTTCAAATGAGATGCAAGA
ACCCAACTCTGTGTAGCGGCAAAGGAACCAGAGTGATTCTGACTGATCTC
AATCACAGCAACCAAACAGATTTTGTTATCAGCAGCAGAGCTTTCATGGC
CTTATCCAACCAGGGCAAGGGCCAAGACATTTTAAAACTTGGAGTTGTCG
ATGTAGAATACAAAAGGGTTCCATGTGAATATAAAAACCAGAACTTGGCT
GTGCGTGTGGAAGAATCCAGTCCAAAACCAAATTATTTAGCAGTTAAAGT
GTTGTATCAGGGTGGTCAAACAGAAATGGTAGCCATGGATGTAGCTCAGG
TTGGTTCTTCAAACTGGGGTTACATGAGCAGAAATTATGGGGCAGTTTGG
GATACAAGTAGAGTGCCAAATGGGGCATTGCAGTTCAGATTTGTGGTAAC
ATCACGCTATGATGGCAAGT
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