FC925660

Overview
NameFC925660
Unique NameFC925660
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length456
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925660 vs. ExPASy Swiss-Prot
Match: CH62_CUCMA (Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.457e-11
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 1
Query:   19 MSLLYACKELDKLQTANHGQKIGVPAIQYALEMLVSAIAYSAGVDGS-VVSKLLQGSKPK---PLRKGENADMLMPEIVFPIENHKSSL 273
            ++LLYA KELDKL TAN  QKIGV  IQ AL+  V  IA +AGV+G+ VV KLL+   P       KGE  DM+   I+ P++  +++L
Sbjct:  448 VALLYASKELDKLSTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMIKAGIIDPLKVIRTAL 536          
BLAST of FC925660 vs. ExPASy Swiss-Prot
Match: CH61_CUCMA (Chaperonin CPN60-1, mitochondrial OS=Cucurbita maxima GN=CPN60-1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 1
Query:   19 MSLLYACKELDKLQTANHGQKIGVPAIQYALEMLVSAIAYSAGVDGS-VVSKLLQGSKPK---PLRKGENADMLMPEIVFPIENHKSSL 273
            ++LLYA KELDKL TAN  QKIGV  IQ AL+  V  IA +AGV+G+ VV KLL+   P       KGE  DM+   I+ P++  +++L
Sbjct:  448 VALLYASKELDKLPTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQDDPDLGYDAAKGEYVDMVKAGIIDPLKVIRTAL 536          
BLAST of FC925660 vs. ExPASy Swiss-Prot
Match: CH61_MAIZE (Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=CPN60I PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.241e-11
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 1
Query:   19 MSLLYACKELDKLQTANHGQKIGVPAIQYALEMLVSAIAYSAGVDGS-VVSKLLQGSKPK---PLRKGENADMLMPEIVFPIENHKSSL 273
            ++LLYA KELDKLQTAN  QKIGV  IQ AL+  V  IA +AGV+G+ VV KLL+           KGE  DM+   I+ P++  +++L
Sbjct:  450 VALLYASKELDKLQTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQENTDLGYDAAKGEYVDMVKTGIIDPLKVIRTAL 538          
BLAST of FC925660 vs. ExPASy Swiss-Prot
Match: CH60_BRANA (Chaperonin CPN60, mitochondrial OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.241e-11
Identity = 42/89 (47.19%), Postives = 56/89 (62.92%), Query Frame = 1
Query:   19 MSLLYACKELDKLQTANHGQKIGVPAIQYALEMLVSAIAYSAGVDGSV-VSKLLQGSKPK---PLRKGENADMLMPEIVFPIENHKSSL 273
            ++LLYA KELDKL TAN   KIGV  IQ AL+  V  IA +AGV+G+V V KLL+   P       KGE  DM+   I+ P++  +++L
Sbjct:  451 VALLYASKELDKLSTANFDHKIGVQIIQNALKTPVYTIASNAGVEGAVIVGKLLESDNPDLGYDAAKGEYVDMVKSGIIDPVKVIRTAL 539          
BLAST of FC925660 vs. ExPASy Swiss-Prot
Match: CH60B_ARATH (Chaperonin CPN60-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g33210 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.538e-11
Identity = 42/89 (47.19%), Postives = 57/89 (64.04%), Query Frame = 1
Query:   19 MSLLYACKELDKLQTANHGQKIGVPAIQYALEMLVSAIAYSAGVDGS-VVSKLLQGSKPK---PLRKGENADMLMPEIVFPIENHKSSL 273
            ++LLYA KEL+KL TAN  QKIGV  IQ AL+  V  IA +AGV+G+ VV KLL+   P       KGE  DM+   I+ P++  +++L
Sbjct:  448 VALLYASKELEKLSTANFDQKIGVQIIQNALKTPVYTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMIKAGIIDPLKVIRTAL 536          
The following BLAST results are available for this feature:
BLAST of FC925660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CH62_CUCMA1.457e-1148.31Chaperonin CPN60-2, mitochondrial OS=Cucurbita max... [more]
CH61_CUCMA3.247e-1148.31Chaperonin CPN60-1, mitochondrial OS=Cucurbita max... [more]
CH61_MAIZE4.241e-1148.31Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=C... [more]
CH60_BRANA4.241e-1147.19Chaperonin CPN60, mitochondrial OS=Brassica napus ... [more]
CH60B_ARATH5.538e-1147.19Chaperonin CPN60-like 1, mitochondrial OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YI08FM1 TF Citrus clementina cDNA clone KN0AAP11YI08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925660 ID=FC925660; Name=FC925660; organism=Citrus clementina; type=EST; length=456bp
GAAGGAGTTGTTTTTGTGATGTCACTTTTATATGCCTGCAAGGAGTTGGA
TAAATTGCAAACTGCTAACCATGGTCAGAAGATTGGTGTTCCAGCTATCC
AATATGCTCTTGAGATGCTGGTGAGCGCGATTGCTTATAGCGCTGGAGTT
GATGGGTCAGTTGTTAGCAAGCTACTCCAGGGATCCAAGCCTAAACCCCT
CCGTAAAGGTGAAAATGCAGATATGCTTATGCCAGAAATTGTTTTTCCCA
TTGAAAACCATAAGAGCAGTCTTGGTGGAGGCTACAAGTGAGATGTTAGC
AAGACTTTGAAATTGAGGCTCTTAAGGTGGCTCAGCTTGTCTTTCCAAGA
ATATTTGCAAAGAAAGTTCCAGCTGATACAAGCCTCCAGAGTAAAACAAA
GGCGTAATGGAGGCCTCCATCAGCTTTCACTGGGTGCCGTTATGGTTACG
GTGATT
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