FC925663

Overview
NameFC925663
Unique NameFC925663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925663 vs. ExPASy Swiss-Prot
Match: PUB22_ARATH (U-box domain-containing protein 22 OS=Arabidopsis thaliana GN=PUB22 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.403e-58
Identity = 109/155 (70.32%), Postives = 130/155 (83.87%), Query Frame = 3
Query:  135 EEIDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNASYGIERIPTPKPPINKAQITKLLNEAAKSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESP 599
            +EI++P+FFLCPISL IMKDPV V TGITYDRESIEKWLF+GK N+CP+TKQV++ E +LTPNHTLRRLIQSWCTLNASYGIERIPTPKPPI K++I KL+ E++ S   Q+KCLK+LR I +EN TNKRCLE+A   EFLA+ V+NS     SP
Sbjct:    3 QEIEIPSFFLCPISLDIMKDPVIVSTGITYDRESIEKWLFSGKKNSCPVTKQVIT-ETDLTPNHTLRRLIQSWCTLNASYGIERIPTPKPPICKSEIEKLIKESSSSHLNQVKCLKRLRQIVSENTTNKRCLEAAEVPEFLANIVSNSVDTYNSP 156          
BLAST of FC925663 vs. ExPASy Swiss-Prot
Match: PUB23_ARATH (U-box domain-containing protein 23 OS=Arabidopsis thaliana GN=PUB23 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 5.333e-58
Identity = 104/149 (69.80%), Postives = 128/149 (85.91%), Query Frame = 3
Query:  135 EEIDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNASYGIERIPTPKPPINKAQITKLLNEAAKSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSN 581
            EEI++P FFLCPISL IMKDPV V TGITYDR+SIEKWLFAGK N+CP+TKQ ++ + +LTPNHTLRRLIQSWCTLNASYG+ERIPTP+PPI K++I KL+ ++A S + Q+KCLK+LR I +EN TNKRCLE+AG  EFLA+ V+N +
Sbjct:    8 EEIEIPPFFLCPISLEIMKDPVIVSTGITYDRDSIEKWLFAGKKNSCPVTKQDIT-DADLTPNHTLRRLIQSWCTLNASYGVERIPTPRPPICKSEIEKLIRDSASSHENQVKCLKRLRQIVSENATNKRCLEAAGVPEFLANIVSNDS 155          
BLAST of FC925663 vs. ExPASy Swiss-Prot
Match: PUB25_ARATH (U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.255e-31
Identity = 73/162 (45.06%), Postives = 98/162 (60.49%), Query Frame = 3
Query:  141 IDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNASYGIERIPTPKPPINKAQITKLLNEAAK------SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLA----SFVTNSNAMEES 596
            I +P  F CPISL +M+DPVTV TG TYDR SIE W+  G N TCP+T+  L S+  L PNHTLRRLIQ WC  N S G+ERIPTPK P +   +  LL++A+       S + +   L++LR  A +++ N+  + +  A E L     S  T+S  + ES
Sbjct:   12 IQIPYHFRCPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCPVTRAPL-SDFTLIPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPTSVRALLSQASAITGTHVSVRSRAAALRRLRGFARDSDKNRVLIAAHNATEILIKILFSETTSSELVSES 172          
BLAST of FC925663 vs. ExPASy Swiss-Prot
Match: PUB26_ARATH (U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.793e-29
Identity = 66/145 (45.52%), Postives = 90/145 (62.07%), Query Frame = 3
Query:  141 IDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNASYGIERIPTPKPPINKAQITKLLNEAAK------SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFL 557
            I +P  F CPISL +M DPVT+ TG TYDR SI+ W+  G N TCP+T+  LS +  L PNHTLRRLIQ WC  N S G+ERIPTPK P +   +  LL++A+       S + +   +++LR +A ++E N+  +    A E L
Sbjct:   12 IQIPYHFRCPISLDLMSDPVTISTGQTYDRTSIDSWIAMG-NTTCPVTRVALS-DFTLIPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPISVRSLLSQASAITGTHVSVRSRAAAIRRLRGLARDSEKNRVLIAGHNAREIL 154          
BLAST of FC925663 vs. ExPASy Swiss-Prot
Match: PUB24_ARATH (U-box domain-containing protein 24 OS=Arabidopsis thaliana GN=PUB24 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.159e-28
Identity = 69/160 (43.12%), Postives = 97/160 (60.62%), Query Frame = 3
Query:  123 NQLMEEIDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNASYGIERIPTPKPPINKAQITKLLNEAAKSPQMQI---KCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEE 593
            +Q  EEI++P +F+CPISL IMKDPVT  +GITYDR++I KWL   K  +CP+TKQ L  + +LTPNH LRRLIQ WC  N + G+ RI TP+ P  K  + + +    K  Q  +   + L+KL  +A +   N+R +   G  + L  FV    + +E
Sbjct:    2 DQEEEEIEIPNYFICPISLEIMKDPVTTVSGITYDRQNIVKWL--EKVPSCPVTKQPLPLDSDLTPNHMLRRLIQHWCVENETRGVVRISTPRVPPGKLNVVEEIKNLKKFGQEALGREETLQKLEVLAMDG-NNRRLMCECGVHKSLILFVVKCTSEDE 158          
BLAST of FC925663 vs. ExPASy Swiss-Prot
Match: PUB20_ARATH (U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.511e-28
Identity = 65/158 (41.14%), Postives = 98/158 (62.03%), Query Frame = 3
Query:  138 EIDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNASYGIERIPTPKPPINKAQITKLLNEAAKSPQMQ-----IKCLKKLRSIAAENETNKRCLESAGAVEFLA----SFVTNSNA 584
            EI +P+ F CPIS  +MKDPV + +GITYDRE+IEKW  +G   TCP+T  VL+S  E  PNHT+RR+IQ WC  +   GIERIPTP+ P+   Q++++    + + +       ++ + K+  +  E+E N++C++  GA   L     +F  N+NA
Sbjct:   30 EITIPSQFQCPISYELMKDPVIIASGITYDRENIEKWFESG-YQTCPVTNTVLTS-LEQIPNHTIRRMIQGWCGSSLGGGIERIPTPRVPVTSHQVSEICERLSAATRRGDYAACMEMVTKMTRLGKESERNRKCVKENGAGLVLCVCFDAFSENANA 185          
BLAST of FC925663 vs. ExPASy Swiss-Prot
Match: PUB21_ARATH (U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.557e-25
Identity = 59/137 (43.07%), Postives = 91/137 (66.42%), Query Frame = 3
Query:  138 EIDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNASYGIERIPTPKPPINKA---QITKLLNEAAKSPQMQIKC---LKKLRSIAAENETNKRCL 530
            EI +P  F CPIS+ +MKDPV + TGITYDR SIE W+ +G N TCP+T  VL++  ++ PNHT+R++IQ WC    S  I+RIPTP+ P+      +I++ L+ A +    + KC   ++K++ +  E+E N++C+
Sbjct:   28 EITIPPEFQCPISIDLMKDPVIISTGITYDRVSIETWINSG-NKTCPVTNTVLTTFDQI-PNHTIRKMIQGWCVEKGSPLIQRIPTPRVPLMPCEVYEISRKLSSATRRGDYE-KCGVIIEKIKKLGDESEKNRKCV 161          
BLAST of FC925663 vs. ExPASy Swiss-Prot
Match: SL11_ORYSJ (Protein spotted leaf 11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.241e-22
Identity = 61/154 (39.61%), Postives = 87/154 (56.49%), Query Frame = 3
Query:  141 IDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNASYGIERIPTPKPPI------NKAQITKLLNE-AAKSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSN 581
            I +P  F CPISL +MKDPV V TG TY+R  IEKW+ +G ++TCP T+Q +S+   LTPN+ LR LI  WC  N     +R   P  P        +A I  LL++  +   + Q     +LR +A  N  N+ C+  AGA+  L S +++S+
Sbjct:  271 ITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASG-HHTCPTTQQKMSTSA-LTPNYVLRSLISQWCETNGMEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSD 422          
BLAST of FC925663 vs. ExPASy Swiss-Prot
Match: SL11_ORYSI (Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.241e-22
Identity = 61/154 (39.61%), Postives = 87/154 (56.49%), Query Frame = 3
Query:  141 IDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNASYGIERIPTPKPPI------NKAQITKLLNE-AAKSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSN 581
            I +P  F CPISL +MKDPV V TG TY+R  IEKW+ +G ++TCP T+Q +S+   LTPN+ LR LI  WC  N     +R   P  P        +A I  LL++  +   + Q     +LR +A  N  N+ C+  AGA+  L S +++S+
Sbjct:  271 ITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASG-HHTCPTTQQKMSTSA-LTPNYVLRSLISQWCETNGMEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSD 422          
BLAST of FC925663 vs. ExPASy Swiss-Prot
Match: PUB15_ARATH (U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.413e-20
Identity = 57/144 (39.58%), Postives = 81/144 (56.25%), Query Frame = 3
Query:  147 VPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNASYGIERIPTPKPPINKAQITKLLNEAAKSPQM--QIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVT 572
            +P  FLCPI+L IM DPV + TG TY++ESI+KW  AG + TCP T+Q L     L PN  L+ LI  WC  N     E+  +P     +     LL EA  S Q+  Q + +K++R +A EN  N+  + +AGA+  L   ++
Sbjct:  290 LPHEFLCPITLEIMLDPVIIATGQTYEKESIQKWFDAG-HKTCPKTRQEL-DHLSLAPNFALKNLIMQWCEKNNFKIPEKEVSPDSQNEQKDEVSLLVEALSSSQLEEQRRSVKQMRLLARENPENRVLIANAGAIPLLVQLLS 431          
The following BLAST results are available for this feature:
BLAST of FC925663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PUB22_ARATH1.403e-5870.32U-box domain-containing protein 22 OS=Arabidopsis ... [more]
PUB23_ARATH5.333e-5869.80U-box domain-containing protein 23 OS=Arabidopsis ... [more]
PUB25_ARATH4.255e-3145.06U-box domain-containing protein 25 OS=Arabidopsis ... [more]
PUB26_ARATH6.793e-2945.52U-box domain-containing protein 26 OS=Arabidopsis ... [more]
PUB24_ARATH1.159e-2843.13U-box domain-containing protein 24 OS=Arabidopsis ... [more]
PUB20_ARATH7.511e-2841.14U-box domain-containing protein 20 OS=Arabidopsis ... [more]
PUB21_ARATH4.557e-2543.07U-box domain-containing protein 21 OS=Arabidopsis ... [more]
SL11_ORYSJ1.241e-2239.61Protein spotted leaf 11 OS=Oryza sativa subsp. jap... [more]
SL11_ORYSI1.241e-2239.61Protein spotted leaf 11 OS=Oryza sativa subsp. ind... [more]
PUB15_ARATH4.413e-2039.58U-box domain-containing protein 15 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YI10FM1 TF Citrus clementina cDNA clone KN0AAP11YI10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925663 ID=FC925663; Name=FC925663; organism=Citrus clementina; type=EST; length=606bp
CAATTCACAGCTTCCCCTCAACTAGAACAACTACTTTTGATCCAATATTT
TCAAAAACCTCTCTAGCCTTCAGATTTTTTTCTCATATATTTTGGGTACT
GTAATTAATTTGAAGAAAAAAAAATCAATTAATGGAAGAAATTGATGTTC
CGACATTTTTTCTGTGCCCAATTTCATTGGCGATCATGAAAGATCCGGTG
ACGGTGCCGACGGGGATAACGTACGATCGGGAAAGCATCGAGAAGTGGTT
ATTTGCCGGCAAAAACAACACGTGTCCGATGACAAAGCAAGTATTATCAT
CAGAATGTGAGCTTACGCCGAACCACACTCTCCGGCGGCTAATTCAATCT
TGGTGCACTCTCAATGCTTCTTATGGCATCGAGAGGATCCCAACGCCGAA
GCCACCCATCAACAAAGCTCAAATCACTAAGCTATTGAATGAAGCAGCTA
AGTCTCCTCAGATGCAAATCAAGTGCCTTAAGAAGCTAAGATCAATCGCG
GCCGAGAATGAAACTAACAAGCGTTGTTTAGAATCTGCCGGAGCGGTTGA
GTTCTTGGCTTCATTTGTGACCAACTCCAATGCTATGGAAGAATCGCCCG
AAGGAT
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