FC925746

Overview
NameFC925746
Unique NameFC925746
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL83_ARATH (60S ribosomal protein L8-3 OS=Arabidopsis thaliana GN=RPL8C PE=2 SV=2)

HSP 1 Score: 417.927 bits (1073), Expect = 2.250e-116
Identity = 192/219 (87.67%), Postives = 208/219 (94.98%), Query Frame = 1
Query:    1 RVIPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGH 657
            RVI  QRKGAGSVFKSHTHHRKGPA+F SL FGERNGYLKGVV EIIHDPGRGAPLARV FRHPF + KQKELF+AAEGMYTGQF+YCGKKATL+VGNVLP+RSIPEGAV+CNVEHHVGDRGV ARASGDYA++I+HNPDNDT+R+KLPSG+KKI+PSGCRAMIGQVAGGGRTEKP+ KAGNAYHK+RVK NCWPKVRGVAMNPVEHPHGGGNHQHIGH
Sbjct:    3 RVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGH 221          
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL81_ARATH (60S ribosomal protein L8-1 OS=Arabidopsis thaliana GN=RPL8A PE=2 SV=2)

HSP 1 Score: 417.542 bits (1072), Expect = 2.939e-116
Identity = 194/219 (88.58%), Postives = 209/219 (95.43%), Query Frame = 1
Query:    1 RVIPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGH 657
            RVI  QRKGAGSVFKSHTHHRKGPA+F SL FGERNGYLKGVV EIIHDPGRGAPLARVTFRHPF + KQKELF+AAEGMYTGQF+YCGKKATL+VGNVLP+RSIPEGAVVCNVEHHVGDRGVLARASGDYA++I+HNPD+DTTR+KLPSG+KKI+PSGCRAMIGQVAGGGRTEKP+ KAGNAYHK+RVK N WPKVRGVAMNPVEHPHGGGNHQHIGH
Sbjct:    3 RVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVTFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGH 221          
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL8_SOLLC (60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 416.772 bits (1070), Expect = 5.013e-116
Identity = 194/219 (88.58%), Postives = 205/219 (93.61%), Query Frame = 1
Query:    1 RVIPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGH 657
            RVI  QRKGAGSVFKSHTHHRKGPA+F +L FGERNGYLKGV+ E+IHDPGRGAPLARVTFRHPF Y  QKELF+AAEGMYTGQFVYCGKKATLMVGNVLP+RSIPEGAVVCNVEH VGDRGV AR SGDYA++ISHNPDN TTRVKLPSGAKKI+PSGCRAMIGQVAGGGRTEKP+ KAGNAYHK+RVK NCWPKVRGVAMNPVEHPHGGGNHQHIGH
Sbjct:    3 RVIRAQRKGAGSVFKSHTHHRKGPARFRTLDFGERNGYLKGVITEVIHDPGRGAPLARVTFRHPFRYKHQKELFVAAEGMYTGQFVYCGKKATLMVGNVLPLRSIPEGAVVCNVEHKVGDRGVFARCSGDYAIVISHNPDNGTTRVKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGH 221          
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL8_TOBAC (60S ribosomal protein L8 OS=Nicotiana tabacum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 407.527 bits (1046), Expect = 3.042e-113
Identity = 189/219 (86.30%), Postives = 203/219 (92.69%), Query Frame = 1
Query:    1 RVIPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGH 657
            R+I  QRKGAGSVFKSHTHHRKGPA+F SL FGERNGYLKGV+ E+IHDPGRGAPLARVTFR+PF Y  QKELF+AAEGMYTGQFVYCGKKATLMVGNVLP+RSIPEGAVVCNVEH VGDRGV AR SG YA++ISHNPDN TTR+KLPSG+KKI+PSGCR MIGQVAGGGRTEKP+ KAGNAYHK+RVK NCWPKVRGVAMNPVEHPHGGGNHQHIGH
Sbjct:    3 RLIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEVIHDPGRGAPLARVTFRYPFRYNHQKELFVAAEGMYTGQFVYCGKKATLMVGNVLPLRSIPEGAVVCNVEHKVGDRGVFARCSGAYAIVISHNPDNGTTRIKLPSGSKKIVPSGCRRMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGH 221          
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL82_ARATH (60S ribosomal protein L8-2 OS=Arabidopsis thaliana GN=RPL8B PE=2 SV=2)

HSP 1 Score: 394.045 bits (1011), Expect = 3.480e-109
Identity = 184/220 (83.64%), Postives = 202/220 (91.82%), Query Frame = 1
Query:    1 RVIPPQRKGA-GSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGH 657
            RVI  QRKGA GSVFKSHTHHRKGPA+F SL +GERNGYLKG+V EIIHDPGRGAPLARV FRHPF YMKQKELF+AAEGMYTGQ++YCGKKA LMVGNVLP+ SIPEGAV+CNVE HVGDRG LARASGDYA++I+HNP+++TTRVKLPSG+KKI+PS CRAMIGQVAGGGRTEKP  KAGNAYHK++ K NCWP VRGVAMNPVEHPHGGGNHQHIGH
Sbjct:    3 RVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLARVAFRHPFRYMKQKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQHIGH 222          
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL8_ANOGA (60S ribosomal protein L8 OS=Anopheles gambiae GN=RpL8 PE=2 SV=2)

HSP 1 Score: 328.176 bits (840), Expect = 2.345e-89
Identity = 153/218 (70.18%), Postives = 178/218 (81.65%), Query Frame = 1
Query:    1 RVIPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            RVI  QRKGAGSVF++HT  RKG  +   L + ER+GYLKGVV +IIHDPGRGAPLA V FR P+ +   K+LFIAAEGMYTGQFVYCG++A L +GNVLP+  +PEG +VCN+E   GDRG LAR SG+YA +I+HNPD   TRVKLPSGAKK++PS  RAMIG VAGGGR +KP+ KAG AYHK++VK NCWPKVRGVAMNPVEHPHGGGNHQHIG
Sbjct:    3 RVIRAQRKGAGSVFRAHTKKRKGEPKLRHLDYAERHGYLKGVVKQIIHDPGRGAPLAVVNFRDPYRFRLSKQLFIAAEGMYTGQFVYCGRRAQLQIGNVLPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIAHNPDTKRTRVKLPSGAKKVLPSANRAMIGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 220          
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL8_SPOFR (60S ribosomal protein L8 OS=Spodoptera frugiperda GN=RpL8 PE=2 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 4.000e-89
Identity = 154/218 (70.64%), Postives = 179/218 (82.11%), Query Frame = 1
Query:    1 RVIPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            RVI  QRKGAGSVF SHT  RKG  +  SL + ER+GY+KGVV +IIHDPGRGAPLA V FR P+ +  +KELFIA EG+YTGQFVYCGKKATL VGNV+PV ++PEG +VCN+E  +GDRG LARASG++A +I HNPD   TRVKLPSGAKK++PS  R M+G VAGGGR +KP+ KAG AYHK++VK NCWP VRGVAMNPVEHPHGGGNHQHIG
Sbjct:    3 RVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIG 220          
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL8_MAMBR (60S ribosomal protein L8 OS=Mamestra brassicae GN=RpL8 PE=2 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 4.000e-89
Identity = 154/218 (70.64%), Postives = 179/218 (82.11%), Query Frame = 1
Query:    1 RVIPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            RVI  QRKGAGSVF SHT  RKG  +  SL + ER+GY+KGVV +IIHDPGRGAPLA V FR P+ +  +KELFIA EG+YTGQFVYCGKKATL VGNV+PV ++PEG +VCN+E  +GDRG LARASG++A +I HNPD   TRVKLPSGAKK++PS  R M+G VAGGGR +KP+ KAG AYHK++VK NCWP VRGVAMNPVEHPHGGGNHQHIG
Sbjct:    3 RVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIG 220          
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL8_XENLA (60S ribosomal protein L8 OS=Xenopus laevis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 325.094 bits (832), Expect = 1.985e-88
Identity = 150/218 (68.81%), Postives = 180/218 (82.57%), Query Frame = 1
Query:    1 RVIPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            RVI  QRKGAGSVFK+H  HRKG A+  ++ F ERNGY+KG+V +IIHDPGRGAPLA+V FR P+ + K+ ELF+AAEG++TGQFVYCGKKA L +GNVLPV ++PEG +VC VE   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S  RA++G VAGGGR +KP+ KAG AYHK++ K NCWP+VRGVAMNPVEHP GGGNHQHIG
Sbjct:    3 RVIRGQRKGAGSVFKAHVKHRKGAAKLRAIDFAERNGYIKGIVKDIIHDPGRGAPLAKVAFRDPYRFKKRTELFVAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAIVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIG 220          
BLAST of FC925746 vs. ExPASy Swiss-Prot
Match: RL8_DROME (60S ribosomal protein L8 OS=Drosophila melanogaster GN=RpL8 PE=2 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 2.593e-88
Identity = 151/218 (69.27%), Postives = 178/218 (81.65%), Query Frame = 1
Query:    1 RVIPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            RVI  QRKGAGSVFK+H   RKG A+  SL F ER+GY++GVV +IIHDPGRGAPLA V FR P+ Y  +KELFIA EGM+TGQFVYCG+KATL +GNV+P+  +PEG ++CN+E   GDRG LAR SG+YA +I+HN D   TRVKLPSGAKK++PS  RAM+G VAGGGR +KP+ KAG AYHK++VK N WPKVRGVAMNPVEHPHGGGNHQHIG
Sbjct:    3 RVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGNVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPSGAKKVVPSANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKRNSWPKVRGVAMNPVEHPHGGGNHQHIG 220          
The following BLAST results are available for this feature:
BLAST of FC925746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL83_ARATH2.250e-11687.6760S ribosomal protein L8-3 OS=Arabidopsis thaliana... [more]
RL81_ARATH2.939e-11688.5860S ribosomal protein L8-1 OS=Arabidopsis thaliana... [more]
RL8_SOLLC5.013e-11688.5860S ribosomal protein L8 OS=Solanum lycopersicum G... [more]
RL8_TOBAC3.042e-11386.3060S ribosomal protein L8 OS=Nicotiana tabacum GN=R... [more]
RL82_ARATH3.480e-10983.6460S ribosomal protein L8-2 OS=Arabidopsis thaliana... [more]
RL8_ANOGA2.345e-8970.1860S ribosomal protein L8 OS=Anopheles gambiae GN=R... [more]
RL8_SPOFR4.000e-8970.6460S ribosomal protein L8 OS=Spodoptera frugiperda ... [more]
RL8_MAMBR4.000e-8970.6460S ribosomal protein L8 OS=Mamestra brassicae GN=... [more]
RL8_XENLA1.985e-8868.8160S ribosomal protein L8 OS=Xenopus laevis GN=rpl8... [more]
RL8_DROME2.593e-8869.2760S ribosomal protein L8 OS=Drosophila melanogaste... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ23FM1 TF Citrus clementina cDNA clone KN0AAP11YJ23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925746 ID=FC925746; Name=FC925746; organism=Citrus clementina; type=EST; length=657bp
CGTGTGATTCCCCCTCAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCA
CACCCACCACCGTAAGGGTCCGGCCCAGTTCCCCAGCCTCCACTTCGGTG
AGCGTAATGGTTACCTCAAGGGTGTCGTCCCAGAGATTATTCACGATCCG
GGTCGTGGTGCCCCGCTGGCCCGAGTTACCTTTCGTCACCCTTTTCCCTA
CATGAAACAAAAGGAGCTTTTCATTGCCGCTGAGGGTATGTACACGGGTC
AGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGTAATGTGTTG
CCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGCATCA
TGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCCGTTA
TCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCCATCT
GGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGCAGGT
TGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCCCAAAGCTGGTAATGCAT
ACCACAAATTCAGAGTGAAGCCAAACTGCTGGCCTAAGGTGCGTGGTGTG
GCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCACAT
TGGTCAT
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