FC925747

Overview
NameFC925747
Unique NameFC925747
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925747 vs. ExPASy Swiss-Prot
Match: RLA02_ARATH (60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 9.965e-50
Identity = 99/127 (77.95%), Postives = 109/127 (85.83%), Query Frame = 3
Query:  171 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPP 551
            +VKA+KAEKKIAYD KLCQL++EYTQILV AADNVGS QLQNIR+GLRGDSVVLMGKNTMMKR++R+H+E TGNTA LNL+PLLQGNVGLIFTKGDL            GAPARVGLVAPIDVVV P
Sbjct:    1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQP 127          
BLAST of FC925747 vs. ExPASy Swiss-Prot
Match: RLA01_ARATH (60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.220e-49
Identity = 99/128 (77.34%), Postives = 109/128 (85.16%), Query Frame = 3
Query:  168 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPP 551
            M VKA+KAEKKI YD+KLCQLL EY+QILV AADNVGS QLQNIR+GLRGDSVVLMGKNTMMKR++R+HA+KTGN AFL+L+PLLQGNVGLIFTKGDL            GAPARVGLVAPIDVVV P
Sbjct:    1 MAVKATKAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQP 128          
BLAST of FC925747 vs. ExPASy Swiss-Prot
Match: RLA03_ARATH (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 2.899e-49
Identity = 98/127 (77.17%), Postives = 109/127 (85.83%), Query Frame = 3
Query:  171 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPP 551
            +VKA+KAEKKIAYD KLCQL++EYTQILV AADNVGS QLQNIR+GLRGDSVVLMGKNTMMKR++R+H+E +GNTA LNL+PLLQGNVGLIFTKGDL            GAPARVGLVAPIDVVV P
Sbjct:    1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQP 127          
BLAST of FC925747 vs. ExPASy Swiss-Prot
Match: RLA0_SOYBN (60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 3.787e-49
Identity = 99/128 (77.34%), Postives = 107/128 (83.59%), Query Frame = 3
Query:  168 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPP 551
            M  K +KAEKKIAYDAKLC L+EEY QILV  +DNVGS+QLQNIR+GLRGDSVVLMGKNTMMKR++RMHAEKTGN A+LNLIPLL GNVGLIFTKGDL            GAPARVGLVAPIDVVVPP
Sbjct:    1 MAPKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPP 128          
BLAST of FC925747 vs. ExPASy Swiss-Prot
Match: RLA0_LUPLU (60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 9.327e-48
Identity = 99/128 (77.34%), Postives = 105/128 (82.03%), Query Frame = 3
Query:  168 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPP 551
            M  KA+KAEKKI YD KLCQLL+EYTQILV  ADNVGS QLQNIR+GLRGDSVVLMGKNTMMKR++R+HAEKTGN AFLNLIPLL GNVGLIFTKG L            GAPA VGLVAPIDVVVPP
Sbjct:    1 MAPKATKAEKKIVYDGKLCQLLDEYTQILVVNADNVGSKQLQNIRQGLRGDSVVLMGKNTMMKRSVRIHAEKTGNQAFLNLIPLLIGNVGLIFTKGYLKEVSEEVAKYKVGAPACVGLVAPIDVVVPP 128          
BLAST of FC925747 vs. ExPASy Swiss-Prot
Match: RLA0_ORYSJ (60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3)

HSP 1 Score: 181.415 bits (459), Expect = 2.540e-45
Identity = 87/128 (67.97%), Postives = 105/128 (82.03%), Query Frame = 3
Query:  168 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPP 551
            M +K +KAEKK+AYD KLCQLL+EYT++L+A ADNVGS+QLQ IR+GLRGDS+VLMGKNT+++R I++HA+ TGN  FL L+PLL GNVGLIFTKGDL            GAPARVGLVAP+DVVVPP
Sbjct:    1 MAIKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPP 128          
BLAST of FC925747 vs. ExPASy Swiss-Prot
Match: RLA0_MAIZE (60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 3.105e-43
Identity = 88/128 (68.75%), Postives = 103/128 (80.47%), Query Frame = 3
Query:  168 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPP 551
            M +K +KAEKKIAYD KLC LL+EYT++L+A ADNVGS QLQ+IRRGLRGDSVVLMGKNT+++R I+++AEKTGN  F  L+ LL GNVGLIFTKGDL            GAPARVGLVAP+DVVVPP
Sbjct:    1 MAIKRTKAEKKIAYDKKLCSLLDEYTKVLIALADNVGSKQLQDIRRGLRGDSVVLMGKNTLIRRCIKVYAEKTGNHTFDPLMDLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPP 128          
BLAST of FC925747 vs. ExPASy Swiss-Prot
Match: RLA0_CHERU (60S acidic ribosomal protein P0 OS=Chenopodium rubrum PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.180e-42
Identity = 89/128 (69.53%), Postives = 100/128 (78.12%), Query Frame = 3
Query:  168 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPP 551
            M VK +KAEKKIAYD KLCQLL+EY+Q+L+A+ADNVGS+QLQ IR GLRGDS+VLMGKNTMMKR+IR+HAE TGN    N+  L   NVGLIFTKGDL            GAPAR GLVAPIDVVVPP
Sbjct:    1 MAVKPTKAEKKIAYDQKLCQLLDEYSQVLIASADNVGSNQLQAIRIGLRGDSIVLMGKNTMMKRSIRLHAENTGNENLRNVEQLFLPNVGLIFTKGDLNQVREEISKYKVGAPARFGLVAPIDVVVPP 128          
BLAST of FC925747 vs. ExPASy Swiss-Prot
Match: RLA0_CERCA (60S acidic ribosomal protein P0 OS=Ceratitis capitata GN=RpLP0 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.813e-25
Identity = 59/129 (45.74%), Postives = 80/129 (62.02%), Query Frame = 3
Query:  171 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRH 557
            +V+ +KA  K  Y  K+ +L +EY +  +  ADNVGS Q+QNIR  LRG  VVLMGKNTMM++ IR H E   N     L+P ++GNVG +FTKGDL             APAR G +AP+ V++P ++
Sbjct:    1 MVRENKAAWKAQYFLKVVELFDEYPKCFIVGADNVGSKQMQNIRTSLRGLGVVLMGKNTMMRKAIRGHLE--NNAQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARAGAIAPLPVIIPAQN 127          
BLAST of FC925747 vs. ExPASy Swiss-Prot
Match: RLA0_DROME (60S acidic ribosomal protein P0 OS=Drosophila melanogaster GN=RpLP0 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.892e-24
Identity = 58/129 (44.96%), Postives = 81/129 (62.79%), Query Frame = 3
Query:  171 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRH 557
            +V+ +KA  K  Y  K+ +L +E+ +  +  ADNVGS Q+QNIR  LRG +VVLMGKNTMM++ IR H E   N     L+P ++GNVG +FTKGDL             APAR G +AP+ V++P ++
Sbjct:    1 MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTMMRKAIRGHLE--NNPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAPLHVIIPAQN 127          
The following BLAST results are available for this feature:
BLAST of FC925747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RLA02_ARATH9.965e-5077.9560S acidic ribosomal protein P0-2 OS=Arabidopsis t... [more]
RLA01_ARATH2.220e-4977.3460S acidic ribosomal protein P0-1 OS=Arabidopsis t... [more]
RLA03_ARATH2.899e-4977.1760S acidic ribosomal protein P0-3 OS=Arabidopsis t... [more]
RLA0_SOYBN3.787e-4977.3460S acidic ribosomal protein P0 OS=Glycine max PE=... [more]
RLA0_LUPLU9.327e-4877.3460S acidic ribosomal protein P0 OS=Lupinus luteus ... [more]
RLA0_ORYSJ2.540e-4567.9760S acidic ribosomal protein P0 OS=Oryza sativa su... [more]
RLA0_MAIZE3.105e-4368.7560S acidic ribosomal protein P0 OS=Zea mays GN=RP-... [more]
RLA0_CHERU1.180e-4269.5360S acidic ribosomal protein P0 OS=Chenopodium rub... [more]
RLA0_CERCA3.813e-2545.7460S acidic ribosomal protein P0 OS=Ceratitis capit... [more]
RLA0_DROME1.892e-2444.9660S acidic ribosomal protein P0 OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ24FM1 TF Citrus clementina cDNA clone KN0AAP11YJ24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925747 ID=FC925747; Name=FC925747; organism=Citrus clementina; type=EST; length=557bp
GGTTTTTTCCCTTTCACTTCCTTCCCTCCCCTTGTATCTCGTTGAGGTTA
AAGAGACGGCAATTCCGCTGCTGTCCGCCTTGGCCCCCCGCTGCTTCGTC
TTGGCCCTCGATTTTGTATAAATTTACAACTTTTTACCCCCAACAAAAGT
AGAACCAAATCCACGAAATGGTAGTGAAAGCATCGAAGGCCGAGAAGAAG
ATCGCGTACGACGCGAAGCTATGCCAGTTGCTGGAAGAGTACACCCAAAT
ATTGGTGGCGGCCGCCGACAACGTGGGGTCCCATCAACTCCAGAACATTC
GTAGGGGTCTGCGTGGAGACTCCGTTGTGCTCATGGGAAAGAACACTATG
ATGAAGAGGACTATCAGAATGCACGCTGAGAAGACCGGTAACACTGCCTT
TCTCAATCTCATCCCCCTCCTTCAGGGCAATGTTGGGTTGATTTTCACAA
AGGGTGATTTGAAGGAAGTGAAAGAGGAGGTTGCTAAGTACAAGGTTGGA
GCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTGGTTGTTCCTCC
CCGGCAC
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