FC925758

Overview
NameFC925758
Unique NameFC925758
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length470
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925758 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.696e-13
Identity = 48/112 (42.86%), Postives = 59/112 (52.68%), Query Frame = 2 
Query:  152 MASWVLSECGLKPLPHIFPRPRTG-----IHPSKARFLHSKKSLTDLKLPLVKC-SGDFSRDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAP 469
            MASWVLSECGL+PLP ++P+PRTG      +P+K RF     S TDL      C S    R++NW L+VSAPLRV  +E E+                        FDPGAP
Sbjct:    1 MASWVLSECGLRPLPRVYPKPRTGHPLLNSNPTKLRF-----SRTDLGNGSSFCLSSGILREKNWALRVSAPLRVLQVEEEE----------ENKEGERVINGGEEFDPGAP 97
[Close]
BLAST of FC925758 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.435e-12
Identity = 44/109 (40.37%), Postives = 55/109 (50.46%), Query Frame = 2 
Query:  152 MASWVLSECGLKPLPHIFPRPRTGI---HPSKARFLHSKKSLTDLKLPLVKCSGDFSRDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAP 469
            MA+W   +CGLKPL  + PRPRTG      S+  FL + K +   K   ++C+    R+RNWGLKVSAPLRVA +E E                         FDPGAP
Sbjct:    1 MATWYHQKCGLKPLAPVIPRPRTGAALSSTSRVEFLDTNKVVAGPKFQPLRCN---LRERNWGLKVSAPLRVASIEEEQ-----KSVDLTNGTNGVEHEKLPEFDPGAP 101
The following BLAST results are available for this feature:
BLAST of FC925758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FAD3C_SESIN1.696e-1342.86Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]
FAD3C_SOYBN1.435e-1240.37Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YK04FM1 TF Citrus clementina cDNA clone KN0AAP11YK04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925758 ID=FC925758; Name=FC925758; organism=Citrus clementina; type=EST; length=470bp
GCAAAGAGAGATATTTGTGAGGTTGTTGTTCACACAACACTCTGACCTAC
TAAATTCTTATTTATTTACTTGGCTTGGCTTGGCTGCTTCACAATTCTTT
GACACCTATCTTCTGTCTCTCTTAACCCTTTGAGGATTTTTCTGAGACCC
AATGGCGAGTTGGGTTCTTTCAGAATGTGGCTTAAAGCCTCTGCCTCATA
TTTTTCCGAGGCCAAGGACTGGAATCCATCCCTCAAAGGCCAGGTTTTTG
CACTCAAAAAAGAGTTTAACAGATCTAAAGCTCCCATTAGTTAAATGTTC
GGGTGATTTTTCTAGAGACAGGAACTGGGGTCTTAAAGTTAGTGCTCCAC
TGAGGGTGGCACCACTTGAGGGGGAGGATGAAGAAGAGAGAATCAACGGT
GTTAATGGGATTGGAAATAACAAAGGAGTCGAAGAAGAAGAGGGATCTGA
ATTTGATCCTGGGGCTCCTC
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